C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP synthase mitochondrial F1 complex assembly factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171953 ATPAF2 9606 - 17:17977409-18039209 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000444058 ATPAF2-015 18021745-18039209 protein_coding
  ENST00000462733 ATPAF2-003 18015059-18039075 nonsense_mediated_decay
  ENST00000465337 ATPAF2-009 18020696-18021794 retained_intron
  ENST00000467560 ATPAF2-011 18018262-18021264 retained_intron
  ENST00000469327 ATPAF2-008 18018648-18025340 processed_transcript
  ENST00000474627 ATPAF2-001 18018010-18039168 protein_coding
  ENST00000488753 ATPAF2-007 18020730-18026535 retained_intron
  ENST00000496852 ATPAF2-004 18018262-18025631 retained_intron
  ENST00000497871 ATPAF2-006 18028111-18039201 retained_intron
  ENST00000577586 ATPAF2-012 18027971-18039164 processed_transcript
  ENST00000581698 ATPAF2-014 18018264-18024671 protein_coding
  ENST00000584205 ATPAF2-020 17977409-18039168 nonsense_mediated_decay
  ENST00000585101 ATPAF2-013 18016207-18039168 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000444058ENST00000462733ENST00000465337ENST00000467560ENST00000474627ENST00000496852ENST00000497871ENST00000577586ENST00000585101
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000444058 2.519±0.00 N/A N/A N/A 4.438±0.00 4.648±0.00 7.286±0.00 6.653±0.00 4.337±3.06 N/A 6.359±0.00 13.182±7.45 12.348±3.44 23.449±0.00
ENST00000462733 N/A N/A 0.681±0.00 2.315±0.00 0.726±0.14 N/A N/A 1.650±0.00 N/A N/A N/A 1.812±0.00 N/A N/A
ENST00000465337 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.304±0.00 N/A N/A N/A N/A
ENST00000467560 3.173±0.00 10.545±0.00 N/A N/A 4.865±0.00 7.340±0.00 N/A 10.234±0.00 6.722±0.00 N/A 6.996±0.00 9.807±0.00 N/A N/A
ENST00000474627 1.115±0.00 3.061±0.00 0.937±0.00 2.646±0.76 1.580±0.09 1.210±0.28 2.579±1.63 1.340±0.98 2.010±0.00 N/A N/A 3.366±1.82 4.649±1.58 N/A
ENST00000496852 N/A N/A N/A N/A N/A N/A N/A N/A 0.638±0.00 N/A N/A N/A N/A N/A
ENST00000497871 N/A N/A N/A N/A 3.232±0.00 1.376±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577586 N/A N/A N/A N/A N/A N/A 1.992±0.00 0.740±0.00 N/A N/A N/A N/A N/A N/A
ENST00000585101 N/A N/A N/A N/A N/A N/A N/A 0.497±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058R CIL_00058R_0002 CGP 17:17843511-18016889
CIL_0000DY CIL_0000DY_0001 CGP 17:17972813-18039209
CIL_0000DZ CIL_0000DZ_0001 CGP 17:17977409-18068404

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0016607 IDA nuclear speck
GO:0043461 IEA proton-transporting ATP synthase complex assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056270 atpaf2 ATP synthase mitochondrial F1 complex assembly factor 2 protein_coding Danio_rerio
ENSMUSG00000042709 Atpaf2 ATP synthase mitochondrial F1 complex assembly factor 2 protein_coding Mus_musculus

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