C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small EDRK-rich factor 1A (telomeric)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172058 SERF1A 9606 + 5:70900665-70918530 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317633 SERF1A-001 70900665-70908375 protein_coding
  ENST00000354833 SERF1A-002 70900687-70918530 protein_coding
  ENST00000503509 SERF1A-004 70901682-70908113 retained_intron
  ENST00000504458 SERF1A-003 70900774-70905541 protein_coding
  ENST00000507348 SERF1A-007 70900978-70908115 protein_coding
  ENST00000511162 SERF1A-009 70900669-70901921 protein_coding
  ENST00000512649 SERF1A-006 70900994-70917521 protein_coding
  ENST00000512868 SERF1A-005 70900981-70917134 protein_coding
  ENST00000513436 SERF1A-008 70900764-70918520 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317633ENST00000512649
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317633 0.012±0.00 0.146±0.00 0.186±0.04 0.206±0.00 0.206±0.00 0.078±0.00 0.176±0.00 0.029±0.00 0.208±0.09 0.094±0.00 0.059±0.02 0.073±0.02 0.257±0.19
ENST00000512649 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A 0.293±0.00 0.072±0.00 0.037±0.00 N/A 0.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZD CIL_0004ZD_0001 CGP 5:70900665-70953942

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0007399 TAS nervous system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074340 serf2 small EDRK-rich factor 2 protein_coding Danio_rerio
ENSDARG00000075881 si:ch211-39k3.2 si:ch211-39k3.2 protein_coding Danio_rerio
ENSMUSG00000021643 Serf1 small EDRK-rich factor 1 protein_coding Mus_musculus

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