C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytochrome c, somatic
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172115 CYCS 9606 - 7:25120091-25125361 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000305786 CYCS-001 25120091-25125361 protein_coding
  ENST00000409409 CYCS-002 25123307-25125249 protein_coding
  ENST00000409764 CYCS-003 25123444-25125260 protein_coding
  ENST00000413447 CYCS-004 25123716-25125260 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000305786ENST00000409409ENST00000409764ENST00000413447
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000305786 5.582±0.00 7.757±0.00 4.233±0.00 19.799±11.50 9.426±3.66 10.045±6.46 18.407±1.42 6.375±1.95 5.537±3.51 3.249±0.23 7.320±3.49 8.836±3.35 3.007±1.39 4.449±0.00
ENST00000409409 13.504±0.00 15.891±0.00 7.431±0.00 16.207±0.00 16.532±3.63 44.264±0.00 32.541±0.00 7.271±0.00 10.156±0.00 3.493±0.00 17.680±0.00 16.939±5.47 7.898±0.00 N/A
ENST00000409764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 67.584±0.00 14.427±0.00 49.835±0.00
ENST00000413447 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.004±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CR CIL_0002CR_0001 CGP 7:24796539-25125361
CIL_00099B CIL_00099B_0001 VISTA 7:25093990-25695067
CIL_00094X CIL_00094X_0001 VISTA 7:25107732-25710366
CIL_0002CQ CIL_0002CQ_0001 CGP 7:25120091-25180356

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000159 TAS protein phosphatase type 2A complex
GO:0004722 TAS protein serine/threonine phosphatase activity
GO:0005506 IEA iron ion binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005739 IEA:IDA mitochondrion
GO:0005743 TAS mitochondrial inner membrane
GO:0005758 TAS mitochondrial intermembrane space
GO:0005829 IMP cytosol
GO:0006309 IMP apoptotic DNA fragmentation
GO:0006915 TAS apoptotic process
GO:0008635 TAS activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c
GO:0009055 IEA electron carrier activity
GO:0016311 TAS dephosphorylation
GO:0020037 IEA:TAS heme binding
GO:0022904 TAS respiratory electron transport chain
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045155 IDA electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity
GO:0045333 TAS cellular respiration
GO:0055114 IEA oxidation-reduction process
GO:0070469 IEA respiratory chain
GO:0097193 TAS intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000095636 cycsa cytochrome c, somatic a protein_coding Danio_rerio
ENSMUSG00000058927 Gm10053 predicted gene 10053 protein_coding Mus_musculus
ENSMUSG00000062038 Gm10108 predicted pseudogene 10108 protein_coding Mus_musculus
ENSMUSG00000063694 Cycs cytochrome c, somatic protein_coding Mus_musculus

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