C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine palmitoyltransferase, long chain base subunit 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172296 SPTLC3 9606 + 20:13008979-13169103 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000399002 SPTLC3-006 13008994-13169103 protein_coding
  ENST00000431275 SPTLC3-003 13126646-13164471 protein_coding
  ENST00000434210 SPTLC3-001 13008987-13072371 protein_coding
  ENST00000450297 SPTLC3-002 13009349-13079867 protein_coding
  ENST00000476791 SPTLC3-005 13008979-13051018 processed_transcript
  ENST00000485952 SPTLC3-004 13126655-13133042 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399002ENST00000431275ENST00000450297ENST00000476791
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399002 0.574±0.00 0.234±0.00 1.909±0.00 0.112±0.07 0.928±0.21 N/A 0.389±0.24 1.885±0.00 1.289±0.47 1.105±0.09 0.046±0.01 0.666±0.27 5.283±1.81 1.186±0.00
ENST00000431275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.778±0.00 6.227±0.00
ENST00000450297 N/A N/A N/A N/A 2.086±0.00 N/A N/A N/A N/A N/A N/A N/A 10.235±0.00 N/A
ENST00000476791 N/A N/A 1.231±0.00 N/A N/A 0.496±0.00 0.131±0.00 N/A N/A 0.632±0.00 0.143±0.00 N/A N/A 0.494±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000361 CIL_000361_0001 CGP 20:11890723-13169103
CIL_0001B5 CIL_0001B5_0001 CGP 20:13008979-13300651

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004758 IDA serine C-palmitoyltransferase activity
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006520 IEA cellular amino acid metabolic process
GO:0006665 TAS sphingolipid metabolic process
GO:0008152 IEA metabolic process
GO:0008483 IEA transaminase activity
GO:0009058 IEA biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016829 IEA lyase activity
GO:0017059 IDA serine C-palmitoyltransferase complex
GO:0030148 TAS sphingolipid biosynthetic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0044281 TAS small molecule metabolic process
GO:0046520 IDA sphingoid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030743 sptlc3 serine palmitoyltransferase, long chain base subunit 3 protein_coding Danio_rerio
ENSMUSG00000039092 Sptlc3 serine palmitoyltransferase, long chain base subunit 3 protein_coding Mus_musculus

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