C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172367 PDZD3 9606 + 11:119185457-119190223 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322712 PDZD3-005 119185486-119190211 protein_coding
  ENST00000355547 PDZD3-001 119185480-119190211 protein_coding
  ENST00000525131 PDZD3-008 119185475-119189760 protein_coding
  ENST00000526279 PDZD3-003 119185475-119186610 retained_intron
  ENST00000526836 PDZD3-009 119185483-119186414 retained_intron
  ENST00000527028 PDZD3-006 119185475-119190190 retained_intron
  ENST00000527308 PDZD3-011 119185457-119186557 retained_intron
  ENST00000527951 PDZD3-012 119185475-119187658 retained_intron
  ENST00000528730 PDZD3-013 119185486-119188137 retained_intron
  ENST00000529098 PDZD3-007 119185475-119189949 retained_intron
  ENST00000529573 PDZD3-010 119185487-119186466 retained_intron
  ENST00000531114 PDZD3-004 119185475-119190223 protein_coding
  ENST00000533688 PDZD3-015 119185480-119188030 nonsense_mediated_decay
  ENST00000534790 PDZD3-002 119185475-119189946 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000525131ENST00000526279ENST00000526836ENST00000528730ENST00000529098ENST00000529573ENST00000531114ENST00000533688ENST00000534790
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000525131 N/A N/A 0.672±0.38 0.043±0.00 2.661±0.00 0.039±0.00 N/A N/A 0.661±0.00 0.291±0.00
ENST00000526279 21.759±0.00 0.431±0.00 5.903±0.00 N/A 0.972±0.00 N/A 0.455±0.00 N/A 0.135±0.00 N/A
ENST00000526836 N/A N/A N/A N/A N/A N/A 0.838±0.00 N/A N/A N/A
ENST00000528730 N/A N/A N/A N/A N/A N/A N/A 0.233±0.00 N/A N/A
ENST00000529098 N/A N/A N/A N/A N/A N/A N/A N/A 0.318±0.07 N/A
ENST00000529573 N/A N/A 4.454±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000531114 1.247±0.00 N/A 0.332±0.16 N/A N/A N/A N/A N/A N/A N/A
ENST00000533688 N/A N/A N/A N/A N/A N/A N/A N/A 0.839±0.00 N/A
ENST00000534790 N/A N/A N/A 0.018±0.00 0.971±0.00 N/A N/A N/A 0.029±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0005903 IDA brush border
GO:0006811 NAS ion transport
GO:0006833 NAS water transport
GO:0007168 IC receptor guanylyl cyclase signaling pathway
GO:0008022 IPI protein C-terminus binding
GO:0008200 TAS ion channel inhibitor activity
GO:0009636 TAS response to toxic substance
GO:0019934 NAS cGMP-mediated signaling
GO:0030251 IDA guanylate cyclase inhibitor activity
GO:0030827 TAS negative regulation of cGMP biosynthetic process
GO:0031283 IDA negative regulation of guanylate cyclase activity
GO:0035003 IDA subapical complex
GO:0045177 IDA apical part of cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040568 pdzd3a PDZ domain containing 3a protein_coding Danio_rerio
ENSDARG00000055656 pdzd3b PDZ domain containing 3b protein_coding Danio_rerio
ENSMUSG00000032105 Pdzd3 PDZ domain containing 3 protein_coding Mus_musculus

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