C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L38
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172809 RPL38 9606 + 17:74203582-74210655 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311111 RPL38-001 74203653-74210655 protein_coding
  ENST00000439590 RPL38-003 74203582-74209880 protein_coding
  ENST00000528433 RPL38-005 74203704-74204190 protein_coding
  ENST00000529123 RPL38-004 74203675-74204593 retained_intron
  ENST00000530646 RPL38-002 74203662-74206283 retained_intron
  ENST00000533498 RPL38-006 74203704-74209896 protein_coding
  ENST00000534490 RPL38-007 74203694-74209461 protein_coding
  ENST00000584577 RPL38-008 74203693-74209878 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311111ENST00000439590ENST00000528433ENST00000533498ENST00000584577
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311111 N/A N/A 9.705±0.00 59.921±0.00 41.803±0.00 29.783±0.00 26.229±0.00 17.246±0.00 36.029±0.00 32.202±0.00 53.415±0.00 70.484±29.56 N/A N/A
ENST00000439590 274.950±0.00 378.217±0.00 16.800±0.00 109.950±0.00 237.389±0.00 218.587±167.96 231.512±0.00 77.528±18.84 106.766±58.16 434.282±0.00 597.231±0.00 730.898±432.34 551.567±258.42 242.958±88.69
ENST00000528433 N/A N/A N/A 280.375±0.00 N/A 374.960±0.00 N/A N/A N/A N/A N/A N/A N/A 429.224±0.00
ENST00000533498 N/A N/A N/A 53.444±0.00 N/A N/A N/A 30.052±0.00 N/A N/A N/A N/A N/A N/A
ENST00000584577 155.375±0.00 179.934±0.00 40.972±0.00 204.650±0.00 118.465±3.37 107.342±5.95 99.922±17.75 84.643±19.22 134.614±28.28 400.175±226.87 397.520±224.20 171.052±89.59 173.094±90.48 64.604±23.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073F CIL_00073F_0001 CGP 17:73334384-74210655
CIL_0003AD CIL_0003AD_0002 CGP 17:74203582-74262020

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001501 IEA skeletal system development
GO:0001503 IEA ossification
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006417 IEA regulation of translation
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007605 IEA sensory perception of sound
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0033291 IEA eukaryotic 80S initiation complex
GO:0034463 IEA 90S preribosome assembly
GO:0042474 IEA middle ear morphogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0048318 IEA axial mesoderm development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006413 rpl38 ribosomal protein L38 protein_coding Danio_rerio
ENSMUSG00000057322 Rpl38 ribosomal protein L38 protein_coding Mus_musculus

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