C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 213
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173821 RNF213 9606 + 17:80260866-80398786 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319921 RNF213-002 80260870-80321463 protein_coding
  ENST00000411702 RNF213-005 80371651-80395253 retained_intron
  ENST00000427003 RNF213-006 80382363-80395312 processed_transcript
  ENST00000508628 RNF213-001 80260866-80395312 protein_coding
  ENST00000558116 RNF213-004 80354112-80382188 retained_intron
  ENST00000558488 RNF213-009 80363353-80364520 retained_intron
  ENST00000559070 RNF213-003 80287959-80336900 retained_intron
  ENST00000559603 RNF213-010 80363671-80365369 retained_intron
  ENST00000559864 RNF213-011 80375816-80377177 retained_intron
  ENST00000560083 RNF213-007 80386386-80396278 retained_intron
  ENST00000560694 RNF213-008 80354459-80360389 retained_intron
  ENST00000570776 RNF213-018 80384873-80386410 retained_intron
  ENST00000571908 RNF213-014 80337514-80339446 retained_intron
  ENST00000572622 RNF213-017 80379456-80380891 retained_intron
  ENST00000573038 RNF213-015 80373069-80375059 protein_coding
  ENST00000573548 RNF213-012 80289761-80292007 retained_intron
  ENST00000573919 RNF213-019 80388530-80389888 retained_intron
  ENST00000574060 RNF213-013 80295729-80298775 retained_intron
  ENST00000574909 RNF213-016 80377678-80379798 retained_intron
  ENST00000582970 RNF213-020 80260868-80398786 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000411702ENST00000427003ENST00000508628ENST00000558116ENST00000559070ENST00000560083ENST00000582970
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000411702 N/A 3.968±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427003 8.193±0.00 15.278±0.00 N/A N/A 10.742±0.00 9.444±0.00 3.615±0.00 18.129±0.00 7.627±0.00 7.797±0.00 5.174±1.59 15.072±1.72 10.226±2.92 7.020±0.00
ENST00000508628 4.378±0.00 2.234±0.00 2.303±0.00 1.893±1.48 8.127±5.67 3.019±1.15 1.600±0.72 5.653±3.18 3.039±0.00 4.029±2.00 1.812±0.00 3.028±1.32 2.474±0.30 N/A
ENST00000558116 N/A N/A N/A N/A N/A N/A N/A 11.052±0.00 N/A N/A 3.286±0.00 7.213±0.00 6.581±2.00 N/A
ENST00000559070 N/A N/A N/A N/A N/A N/A N/A N/A 4.090±0.00 N/A N/A N/A N/A N/A
ENST00000560083 N/A 5.390±0.00 N/A N/A N/A N/A N/A 11.086±0.00 N/A 4.339±0.00 N/A 5.716±0.00 N/A N/A
ENST00000582970 N/A 1.448±0.00 1.772±0.00 0.981±0.57 1.343±0.00 N/A 0.689±0.00 1.644±0.00 1.093±0.00 N/A 0.898±0.00 0.997±0.00 N/A 1.251±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046U CIL_00046U_0001 CGP 17:80219699-80398786
CIL_0002LC CIL_0002LC_0001 CGP 17:80260866-80438086

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0006200 IDA ATP catabolic process
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0016567 IDA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0016887 IDA ATPase activity
GO:0051865 IDA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075710 rnf213a ring finger protein 213a protein_coding Danio_rerio
ENSDARG00000089494 RNF213 (3 of 4) ring finger protein 213 protein_coding Danio_rerio
ENSDARG00000090575 RNF213 (4 of 4) ring finger protein 213 protein_coding Danio_rerio
ENSMUSG00000070327 Rnf213 ring finger protein 213 protein_coding Mus_musculus

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