C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromobox homolog 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173894 CBX2 9606 + 17:79778132-79787983 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269399 CBX2-002 79778194-79782532 protein_coding
  ENST00000310942 CBX2-001 79778132-79787983 protein_coding
  ENST00000571484 CBX2-003 79778163-79779739 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000310942ENST00000571484
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000310942 0.306±0.00 0.692±0.00 0.065±0.00 0.129±0.05 0.456±0.16 0.665±0.00 0.295±0.27 0.312±0.00 0.094±0.00 0.147±0.07 1.882±1.04 1.900±0.55 3.480±2.75
ENST00000571484 0.446±0.00 N/A N/A N/A N/A N/A N/A 0.471±0.00 N/A 0.281±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XJ CIL_0002XJ_0001 CGP 17:79730919-79787983
CIL_0002X9 CIL_0002X9_0001 CGP 17:79778132-79801683

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000791 IEA euchromatin
GO:0000792 IEA heterochromatin
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0030154 IEA cell differentiation
GO:0031519 IDA PcG protein complex
GO:0035064 IEA methylated histone binding
GO:0035102 IDA PRC1 complex
GO:0045137 IMP development of primary sexual characteristics

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044938 cbx2 chromobox homolog 2 (Drosophila Pc class) protein_coding Danio_rerio
ENSMUSG00000025577 Cbx2 chromobox 2 protein_coding Mus_musculus

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