C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ral GTPase activating protein, alpha subunit 1 (catalytic)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000174373 RALGAPA1 9606 - 14:35538352-35809304 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307138 RALGAPA1-001 35538352-35809304 protein_coding
  ENST00000382366 RALGAPA1-003 35539635-35808934 protein_coding
  ENST00000389698 RALGAPA1-002 35538352-35809226 protein_coding
  ENST00000553892 RALGAPA1-007 35548533-35808835 protein_coding
  ENST00000553917 RALGAPA1-012 35689534-35723117 retained_intron
  ENST00000554259 RALGAPA1-019 35538357-35651876 protein_coding
  ENST00000554355 RALGAPA1-015 35549174-35572860 retained_intron
  ENST00000554573 RALGAPA1-006 35538352-35627276 protein_coding
  ENST00000554652 RALGAPA1-005 35676229-35760894 retained_intron
  ENST00000554704 RALGAPA1-018 35706634-35760857 processed_transcript
  ENST00000555828 RALGAPA1-008 35748792-35756884 processed_transcript
  ENST00000556106 RALGAPA1-017 35539160-35542524 processed_transcript
  ENST00000556192 RALGAPA1-021 35807805-35809116 processed_transcript
  ENST00000556837 RALGAPA1-016 35564373-35572680 processed_transcript
  ENST00000556839 RALGAPA1-011 35686542-35723876 retained_intron
  ENST00000557069 RALGAPA1-010 35728341-35742526 retained_intron
  ENST00000557104 RALGAPA1-009 35748400-35750529 retained_intron
  ENST00000557638 RALGAPA1-013 35683446-35684974 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307138ENST00000382366ENST00000389698ENST00000553892ENST00000554259ENST00000554573ENST00000554652
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307138 N/A 0.407±0.00 N/A N/A N/A 3.599±0.00 N/A 0.261±0.00 N/A N/A N/A N/A 0.496±0.00 0.938±0.00
ENST00000382366 0.325±0.00 N/A 1.118±0.00 N/A 0.259±0.00 3.034±0.00 N/A 0.423±0.06 2.093±0.00 N/A 2.267±0.00 2.718±0.00 N/A N/A
ENST00000389698 0.551±0.00 N/A 1.134±0.00 2.669±0.00 N/A 0.402±0.00 N/A N/A N/A 1.714±0.79 N/A 1.324±0.54 0.358±0.03 1.713±0.50
ENST00000553892 N/A N/A 1.566±0.00 4.108±0.00 3.695±0.00 4.080±0.00 1.638±0.00 N/A N/A 5.443±0.00 N/A N/A N/A N/A
ENST00000554259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.392±0.00 1.420±0.21 0.288±0.00 1.111±0.00
ENST00000554573 1.590±0.00 1.494±0.00 N/A 2.355±0.00 0.734±0.00 1.680±0.00 1.274±0.00 3.083±0.00 0.452±0.00 2.501±0.00 0.913±0.00 1.933±0.25 0.646±0.25 1.895±0.00
ENST00000554652 N/A N/A 1.266±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MF CIL_0008MF_0001 VISTA 14:35250818-35851792
CIL_0008ME CIL_0008ME_0001 VISTA 14:35273755-35874460
CIL_0007LS CIL_0007LS_0001 UCNEbase 14:35509773-36362792
CIL_00045O CIL_00045O_0001 CGP 14:35534042-35809304
CIL_00045N CIL_00045N_0001 CGP 14:35538352-35932325

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005488 IEA binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0017123 ISS Ral GTPase activator activity
GO:0032859 ISS activation of Ral GTPase activity
GO:0043547 IEA positive regulation of GTPase activity
GO:0046982 IPI protein heterodimerization activity
GO:0051056 IEA regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076889 ralgapa1 Ral GTPase activating protein, alpha subunit 1 (catalytic) protein_coding Danio_rerio
ENSMUSG00000021027 Ralgapa1 Ral GTPase activating protein, alpha subunit 1 protein_coding Mus_musculus

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