C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000174444 RPL4 9606 - 15:66498015-66524532 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307961 RPL4-001 66498015-66504883 protein_coding
  ENST00000561554 RPL4-014 66502702-66504846 retained_intron
  ENST00000561775 RPL4-006 66499346-66504827 retained_intron
  ENST00000563473 RPL4-016 66500131-66501381 processed_transcript
  ENST00000564439 RPL4-011 66501399-66504845 retained_intron
  ENST00000564517 RPL4-019 66505243-66523411 processed_transcript
  ENST00000564647 RPL4-015 66500058-66502407 retained_intron
  ENST00000564744 RPL4-017 66500056-66500842 retained_intron
  ENST00000565723 RPL4-018 66499323-66499818 processed_transcript
  ENST00000566039 RPL4-007 66501008-66504846 retained_intron
  ENST00000566491 RPL4-008 66502996-66504846 retained_intron
  ENST00000566622 RPL4-013 66501560-66504833 retained_intron
  ENST00000566624 RPL4-009 66502270-66504846 retained_intron
  ENST00000567229 RPL4-005 66499320-66504846 retained_intron
  ENST00000568588 RPL4-020 66499323-66524532 protein_coding
  ENST00000569438 RPL4-012 66501785-66504845 protein_coding
  ENST00000569696 RPL4-010 66499575-66504846 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000561775ENST00000564439ENST00000564744ENST00000568588ENST00000569438ENST00000569696
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000561775 383.156±0.00 450.194±0.00 30.309±0.00 94.057±16.44 154.302±121.46 236.513±199.67 110.690±0.00 136.913±1.75 82.212±42.40 95.452±56.42 128.399±0.00 301.397±203.41 380.877±230.99 304.955±0.00
ENST00000564439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 286.667±0.00 N/A N/A
ENST00000564744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 531.377±0.00 203.237±0.00 163.086±0.00
ENST00000568588 N/A N/A 17.798±0.00 28.681±11.50 N/A N/A 9.143±0.00 31.465±0.00 32.927±0.00 N/A 18.114±0.00 115.195±37.86 N/A N/A
ENST00000569438 N/A N/A 39.780±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 627.743±77.40 N/A
ENST00000569696 307.463±0.00 412.488±0.00 N/A 108.826±0.00 281.980±0.00 527.375±0.00 128.225±0.00 192.686±0.00 167.106±0.00 234.632±0.00 162.893±0.00 N/A N/A 384.960±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q7 CIL_0008Q7_0001 VISTA 15:66378983-66980203
CIL_000476 CIL_000476_0002 CGP 15:66498015-66550128

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041182 rpl4 ribosomal protein L4 protein_coding Danio_rerio
ENSMUSG00000032399 Rpl4 ribosomal protein L4 protein_coding Mus_musculus

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