C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: La ribonucleoprotein domain family, member 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000174720 LARP7 9606 + 4:112636964-112657592 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324052 LARP7-201 112637456-112657592 protein_coding
  ENST00000344442 LARP7-001 112636964-112657586 protein_coding
  ENST00000503316 LARP7-012 112646890-112647338 processed_transcript
  ENST00000503898 LARP7-015 112655363-112657592 processed_transcript
  ENST00000504079 LARP7-007 112637193-112638020 retained_intron
  ENST00000505034 LARP7-004 112637456-112647449 protein_coding
  ENST00000505216 LARP7-008 112637525-112646902 nonsense_mediated_decay
  ENST00000507443 LARP7-009 112644304-112646671 protein_coding
  ENST00000508577 LARP7-006 112637165-112646642 protein_coding
  ENST00000509061 LARP7-002 112637126-112657586 protein_coding
  ENST00000509622 LARP7-003 112637127-112657586 nonsense_mediated_decay
  ENST00000511529 LARP7-013 112647211-112654113 protein_coding
  ENST00000512361 LARP7-014 112653098-112654762 retained_intron
  ENST00000512589 LARP7-010 112637107-112646593 nonsense_mediated_decay
  ENST00000513553 LARP7-011 112637181-112653123 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324052ENST00000344442ENST00000509622ENST00000511529ENST00000512589ENST00000513553
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324052 7.186±0.00 18.576±0.00 N/A 7.256±0.00 2.384±0.00 3.260±1.93 6.885±0.00 5.051±3.50 2.292±1.40 2.253±0.00 N/A 5.311±1.03 3.184±0.45 5.389±0.00
ENST00000344442 N/A N/A 1.221±0.00 1.898±0.00 2.899±0.35 1.526±0.00 4.003±2.91 2.555±0.00 1.952±0.12 2.128±1.20 0.839±0.00 8.830±5.70 3.826±0.00 14.342±5.23
ENST00000509622 N/A N/A 0.720±0.00 N/A N/A N/A N/A 1.110±0.00 N/A N/A N/A 2.968±0.00 2.933±2.27 N/A
ENST00000511529 N/A N/A N/A 8.135±0.00 N/A N/A N/A 8.098±0.00 3.605±0.00 2.994±0.00 2.780±0.00 N/A 1.854±0.00 N/A
ENST00000512589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.893±0.00 N/A
ENST00000513553 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.945±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WR CIL_0008WR_0001 VISTA 4:112221234-112822374

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0006396 IEA RNA processing
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017315 larp7 La ribonucleoprotein domain family, member 7 protein_coding Danio_rerio
ENSMUSG00000027968 Larp7 La ribonucleoprotein domain family, member 7 protein_coding Mus_musculus
ENSMUSG00000066107 Gm12666 predicted gene 12666 protein_coding Mus_musculus

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