C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal recognition particle 72kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000174780 SRP72 9606 + 4:56466915-56503680 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342756 SRP72-001 56466915-56503107 protein_coding
  ENST00000504757 SRP72-008 56467618-56474508 protein_coding
  ENST00000505314 SRP72-002 56474134-56491565 protein_coding
  ENST00000507126 SRP72-004 56500512-56503680 retained_intron
  ENST00000510663 SRP72-005 56467617-56502482 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342756ENST00000504757ENST00000505314ENST00000507126ENST00000510663
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342756 5.488±0.00 7.374±0.00 2.590±0.00 6.692±1.37 4.502±0.07 6.254±1.88 1.546±0.69 3.673±0.83 5.000±0.55 5.790±1.50 1.364±0.56 9.698±3.47 8.682±2.83 11.196±4.75
ENST00000504757 N/A N/A N/A N/A N/A N/A 1.847±0.00 N/A 6.075±0.00 N/A 1.115±0.00 N/A N/A N/A
ENST00000505314 N/A N/A N/A N/A N/A N/A N/A 6.923±0.00 N/A 8.733±0.00 2.156±0.88 N/A N/A N/A
ENST00000507126 3.252±0.00 6.812±0.00 N/A 5.463±0.00 4.781±0.00 4.241±0.00 2.220±0.00 8.239±0.00 4.552±0.00 5.258±0.00 1.958±0.00 7.517±0.47 6.714±0.27 5.776±0.00
ENST00000510663 12.368±0.00 7.143±0.00 N/A 10.688±0.00 5.487±1.57 8.102±0.00 3.090±2.12 4.172±1.58 6.162±0.00 8.311±0.00 2.344±2.08 6.430±2.27 7.917±1.66 10.963±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0001 VISTA 4:56396035-56999166
CIL_0001WO CIL_0001WO_0001 CGP 4:56435741-56503680
CIL_0001WL CIL_0001WL_0001 CGP 4:56466915-56524448

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005047 IPI signal recognition particle binding
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005786 IDA signal recognition particle, endoplasmic reticulum targeting
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006614 TAS:IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0010467 TAS gene expression
GO:0042493 IDA response to drug
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0048500 IEA signal recognition particle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014139 srp72 signal recognition particle 72 protein_coding Danio_rerio
ENSMUSG00000036323 Srp72 signal recognition particle 72 protein_coding Mus_musculus

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