C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphofurin acidic cluster sorting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000175115 PACS1 9606 + 11:66070363-66244747 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000320580 PACS1-001 66070454-66244747 protein_coding
  ENST00000524784 PACS1-006 66216543-66221210 nonsense_mediated_decay
  ENST00000524815 PACS1-013 66240948-66243318 protein_coding
  ENST00000525798 PACS1-012 66238516-66241548 retained_intron
  ENST00000527224 PACS1-003 66070363-66218697 retained_intron
  ENST00000527380 PACS1-016 66100763-66216250 protein_coding
  ENST00000528935 PACS1-010 66231794-66234232 protein_coding
  ENST00000529677 PACS1-015 66241448-66243637 protein_coding
  ENST00000529757 PACS1-004 66230380-66243282 protein_coding
  ENST00000529795 PACS1-011 66233820-66235517 retained_intron
  ENST00000531298 PACS1-007 66216198-66220677 nonsense_mediated_decay
  ENST00000531597 PACS1-014 66241227-66243234 protein_coding
  ENST00000533756 PACS1-017 66083973-66211228 protein_coding
  ENST00000533811 PACS1-008 66220288-66221190 retained_intron
  ENST00000534273 PACS1-009 66220670-66221643 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000320580ENST00000524784ENST00000527224ENST00000527380ENST00000531298ENST00000531597ENST00000533811ENST00000534273
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000320580 29.073±0.00 19.756±0.00 1.177±0.00 11.722±10.23 15.697±12.30 18.434±0.00 10.212±9.44 13.908±0.00 2.994±0.19 15.054±12.12 5.672±5.41 18.521±16.93 14.548±2.82 38.955±7.25
ENST00000524784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.873±0.00 N/A N/A N/A
ENST00000527224 N/A N/A 1.055±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527380 N/A N/A N/A N/A N/A N/A N/A 2.403±0.00 N/A N/A N/A N/A N/A N/A
ENST00000531298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.911±0.00 N/A 30.257±0.00
ENST00000531597 N/A N/A N/A N/A N/A N/A N/A 1.430±0.00 N/A N/A N/A N/A N/A N/A
ENST00000533811 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.465±0.00 N/A N/A N/A N/A
ENST00000534273 N/A N/A N/A N/A N/A N/A N/A 1.990±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000042 IEA protein targeting to Golgi
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0016032 TAS viral process
GO:0030137 IEA COPI-coated vesicle
GO:0044325 IPI ion channel binding
GO:0050690 TAS regulation of defense response to virus by virus
GO:0072661 IMP protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019800 PACS1 (1 of 3) phosphofurin acidic cluster sorting protein 1 protein_coding Danio_rerio
ENSDARG00000044556 pacs1a phosphofurin acidic cluster sorting protein 1a protein_coding Danio_rerio
ENSMUSG00000024855 Pacs1 phosphofurin acidic cluster sorting protein 1 protein_coding Mus_musculus

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