C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: eukaryotic translation initiation factor 3, subunit F
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000175390 EIF3F 9606 + 11:7970251-8001862 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309828 EIF3F-201 7987320-7996169 protein_coding
  ENST00000528653 EIF3F-006 7987356-7992993 retained_intron
  ENST00000528763 EIF3F-008 7994698-7996018 retained_intron
  ENST00000530219 EIF3F-005 7992127-7996169 retained_intron
  ENST00000531329 EIF3F-004 7987337-7996075 nonsense_mediated_decay
  ENST00000531572 EIF3F-009 7995014-7995633 protein_coding
  ENST00000532882 EIF3F-007 7991822-7992998 retained_intron
  ENST00000533626 EIF3F-001 7970251-8001862 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000309828ENST00000531329ENST00000533626
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000309828 76.844±0.00 95.052±0.00 4.830±0.00 20.510±13.39 35.063±26.71 56.378±45.74 18.789±12.32 29.500±18.17 18.771±8.85 40.540±32.78 45.836±31.50 118.289±75.50 157.450±17.14 83.719±1.39
ENST00000531329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.273±0.00 5.523±0.00 N/A N/A
ENST00000533626 1.195±0.00 3.078±0.00 N/A N/A 1.610±0.00 2.744±0.00 N/A 1.884±0.00 1.978±1.56 0.914±0.00 1.334±0.75 2.764±0.00 N/A 2.420±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096V CIL_00096V_0001 VISTA 11:7589795-8192277
CIL_0009BA CIL_0009BA_0001 VISTA 11:7904499-8509136
CIL_0008M3 CIL_0008M3_0001 VISTA 11:7953590-8554788
CIL_00046G CIL_00046G_0001 CGP 11:7959424-8001862
CIL_00046S CIL_00046S_0001 CGP 11:7970251-8106112

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0003743 TAS translation initiation factor activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0005852 IDA eukaryotic translation initiation factor 3 complex
GO:0006412 TAS translation
GO:0006413 IC translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0006508 IEA proteolysis
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0016579 IDA protein deubiquitination
GO:0031369 IEA translation initiation factor binding
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0044267 TAS cellular protein metabolic process
GO:0071541 IEA eukaryotic translation initiation factor 3 complex, eIF3m

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077533 eif3f eukaryotic translation initiation factor 3, subunit F protein_coding Danio_rerio
ENSMUSG00000031029 Eif3f eukaryotic translation initiation factor 3, subunit F protein_coding Mus_musculus

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