C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spectrin repeat containing, nuclear envelope family member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000176438 SYNE3 9606 - 14:95407266-95475836 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334258 SYNE3-005 95417494-95475836 protein_coding
  ENST00000553340 SYNE3-003 95443661-95475836 protein_coding
  ENST00000554873 SYNE3-004 95417604-95456189 protein_coding
  ENST00000555759 SYNE3-002 95437802-95467856 retained_intron
  ENST00000557275 SYNE3-001 95407266-95475836 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334258ENST00000555759ENST00000557275
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334258 5.368±0.00 N/A 0.447±0.00 2.286±0.00 N/A 0.387±0.00 0.941±0.00 3.000±0.00 1.835±0.07 0.667±0.00 1.033±0.00 0.850±0.14 N/A
ENST00000555759 N/A N/A N/A N/A 0.429±0.00 N/A N/A 1.239±0.00 N/A N/A N/A N/A N/A
ENST00000557275 3.580±0.00 3.166±0.00 1.205±0.00 8.793±0.00 1.408±1.03 0.731±0.00 0.692±0.00 0.375±0.09 1.139±0.00 0.466±0.11 0.925±0.49 0.683±0.09 0.653±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085I CIL_00085I_0001 VISTA 14:95070077-95673144
CIL_00099M CIL_00099M_0001 VISTA 14:95131820-95732594
CIL_0008Z4 CIL_0008Z4_0001 VISTA 14:95131888-95732401
CIL_0007F2 CIL_0007F2_0001 CGP 14:95407266-95544724

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005635 IDA nuclear envelope
GO:0005640 IEA nuclear outer membrane
GO:0005783 IEA endoplasmic reticulum
GO:0007010 IMP cytoskeleton organization
GO:0008360 IMP regulation of cell shape
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0034993 IDA SUN-KASH complex
GO:0051015 IMP actin filament binding
GO:0090150 IDA establishment of protein localization to membrane
GO:0090286 IDA cytoskeletal anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023237 syne3 spectrin repeat containing, nuclear envelope family member 3 protein_coding Danio_rerio
ENSMUSG00000054150 Syne3 spectrin repeat containing, nuclear envelope family member 3 protein_coding Mus_musculus

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