C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myosin ID
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000176658 MYO1D 9606 - 17:32492522-32877177 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318217 MYO1D-001 32492522-32877177 protein_coding
  ENST00000394649 MYO1D-004 32492609-32863043 protein_coding
  ENST00000577252 MYO1D-008 32721106-32755518 nonsense_mediated_decay
  ENST00000577352 MYO1D-012 32494719-32659406 retained_intron
  ENST00000577576 MYO1D-014 32494453-32497073 processed_transcript
  ENST00000579584 MYO1D-002 32594203-32877144 protein_coding
  ENST00000580538 MYO1D-007 32721145-32755719 retained_intron
  ENST00000580547 MYO1D-017 32594341-32602711 processed_transcript
  ENST00000581059 MYO1D-011 32638775-32659451 processed_transcript
  ENST00000582217 MYO1D-016 32653864-32684284 processed_transcript
  ENST00000582751 MYO1D-006 32738358-32756262 processed_transcript
  ENST00000583611 MYO1D-009 32734725-32749005 processed_transcript
  ENST00000583621 MYO1D-003 32759812-32877177 protein_coding
  ENST00000584232 MYO1D-015 32727587-32760396 processed_transcript
  ENST00000585094 MYO1D-010 32658979-32721135 retained_intron
  ENST00000623444 MYO1D-013 32658522-32659142 TEC

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318217ENST00000577252ENST00000579584ENST00000580547ENST00000581059ENST00000583621ENST00000585094
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318217 26.326±0.00 7.600±0.00 1.317±0.00 3.128±1.80 4.342±0.26 9.440±1.75 1.804±0.00 5.561±4.33 1.606±0.18 5.916±3.98 1.278±1.19 7.449±3.71 6.502±2.55 8.946±7.19
ENST00000577252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.384±0.00 N/A N/A N/A
ENST00000579584 N/A N/A 0.756±0.00 1.149±0.44 6.920±0.00 7.008±0.00 0.357±0.00 1.148±0.00 2.007±0.00 3.353±0.00 N/A 5.441±0.00 N/A 2.120±0.00
ENST00000580547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.727±0.00
ENST00000581059 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.515±0.00 N/A N/A N/A N/A
ENST00000583621 N/A N/A N/A 1.441±0.00 9.876±0.00 N/A 1.179±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000585094 N/A N/A N/A N/A N/A 32.292±0.00 N/A N/A N/A N/A N/A N/A 9.907±0.00 8.098±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RL CIL_0005RL_0002 CGP 17:32486619-32877177
CIL_0005K8 CIL_0005K8_0001 CGP 17:32492522-32945106

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000146 IEA microfilament motor activity
GO:0003774 IEA motor activity
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005768 ISS endosome
GO:0005790 IEA smooth endoplasmic reticulum
GO:0006200 IEA ATP catabolic process
GO:0008152 IEA metabolic process
GO:0010923 IDA negative regulation of phosphatase activity
GO:0016459 IEA myosin complex
GO:0030673 IEA axolemma
GO:0030898 IEA actin-dependent ATPase activity
GO:0048306 IEA calcium-dependent protein binding
GO:0061502 ISS early endosome to recycling endosome transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036863 MYO1D myosin ID protein_coding Danio_rerio
ENSMUSG00000035441 Myo1d myosin ID protein_coding Mus_musculus

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