C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 38, member 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000177058 SLC38A9 9606 - 5:55625845-55773194 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318672 SLC38A9-201 55625847-55697994 protein_coding
  ENST00000396865 SLC38A9-001 55625845-55712726 protein_coding
  ENST00000416547 SLC38A9-202 55625847-55697994 protein_coding
  ENST00000502247 SLC38A9-017 55669829-55692731 protein_coding
  ENST00000502416 SLC38A9-011 55697959-55712329 processed_transcript
  ENST00000503817 SLC38A9-021 55669259-55692620 protein_coding
  ENST00000503891 SLC38A9-010 55669596-55712330 protein_coding
  ENST00000504880 SLC38A9-003 55695992-55773194 processed_transcript
  ENST00000505563 SLC38A9-020 55692871-55712290 nonsense_mediated_decay
  ENST00000505708 SLC38A9-008 55625845-55692726 nonsense_mediated_decay
  ENST00000506624 SLC38A9-015 55697846-55712291 protein_coding
  ENST00000507109 SLC38A9-009 55697846-55712333 protein_coding
  ENST00000507216 SLC38A9-014 55704275-55712298 processed_transcript
  ENST00000507447 SLC38A9-018 55664560-55669665 retained_intron
  ENST00000508124 SLC38A9-002 55625858-55712315 nonsense_mediated_decay
  ENST00000511233 SLC38A9-006 55626560-55697992 protein_coding
  ENST00000512208 SLC38A9-016 55656721-55712261 protein_coding
  ENST00000512595 SLC38A9-005 55626411-55692693 protein_coding
  ENST00000513275 SLC38A9-013 55697879-55712293 protein_coding
  ENST00000513993 SLC38A9-012 55669836-55712302 protein_coding
  ENST00000514806 SLC38A9-019 55669121-55712261 retained_intron
  ENST00000515159 SLC38A9-007 55625845-55664863 retained_intron
  ENST00000515629 SLC38A9-004 55625858-55693053 protein_coding
  ENST00000515754 SLC38A9-022 55633396-55645868 processed_transcript
  ENST00000524030 SLC38A9-024 55649210-55658038 processed_transcript
  ENST00000524154 SLC38A9-023 55656745-55665132 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318672ENST00000396865ENST00000416547ENST00000504880ENST00000505708ENST00000508124ENST00000511233ENST00000512595ENST00000514806ENST00000515159ENST00000515629ENST00000515754
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318672 1.152±0.00 N/A 0.760±0.07 1.611±0.00 0.751±0.00 0.386±0.00 2.286±0.00 1.885±0.00 2.090±0.00 0.529±0.00 1.407±0.08 14.262±1.52 1.823±0.00
ENST00000396865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.161±0.00 N/A N/A
ENST00000416547 N/A N/A N/A N/A N/A N/A N/A N/A 0.397±0.00 N/A N/A N/A N/A
ENST00000504880 1.629±0.00 2.843±0.00 N/A N/A 1.040±0.00 N/A N/A N/A 0.981±0.00 0.501±0.00 1.883±0.00 N/A N/A
ENST00000505708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.382±0.00
ENST00000508124 N/A N/A N/A N/A N/A 0.287±0.00 N/A N/A N/A 0.450±0.00 N/A 3.777±0.00 N/A
ENST00000511233 N/A N/A N/A N/A N/A N/A N/A N/A 1.444±0.00 0.749±0.00 0.977±0.00 14.010±0.00 5.489±0.63
ENST00000512595 N/A N/A 0.792±0.00 N/A 1.111±0.00 N/A N/A N/A N/A N/A N/A N/A 4.063±0.00
ENST00000514806 N/A N/A N/A N/A 2.509±0.00 N/A 2.070±0.00 N/A N/A N/A N/A N/A N/A
ENST00000515159 N/A N/A N/A N/A N/A N/A N/A 0.313±0.00 N/A N/A N/A N/A N/A
ENST00000515629 N/A N/A N/A 0.493±0.00 N/A 0.349±0.00 N/A N/A N/A N/A 1.010±0.00 N/A N/A
ENST00000515754 N/A N/A N/A N/A N/A N/A 2.256±0.00 N/A N/A N/A N/A 21.806±0.00 7.703±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006814 IEA sodium ion transport
GO:0006865 IEA amino acid transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032769 slc38a9 solute carrier family 38, member 9 protein_coding Danio_rerio
ENSMUSG00000047789 Slc38a9 solute carrier family 38, member 9 protein_coding Mus_musculus

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