C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pseudouridylate synthase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000177192 PUS1 9606 + 12:131929200-131945896 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322060 PUS1-003 131929242-131941983 protein_coding
  ENST00000376649 PUS1-001 131929223-131945896 protein_coding
  ENST00000443358 PUS1-002 131929200-131943859 protein_coding
  ENST00000456665 PUS1-008 131929307-131932833 protein_coding
  ENST00000535067 PUS1-010 131929755-131943857 protein_coding
  ENST00000537484 PUS1-007 131929765-131941422 protein_coding
  ENST00000538037 PUS1-005 131929282-131939275 protein_coding
  ENST00000542167 PUS1-004 131929276-131943859 protein_coding
  ENST00000543754 PUS1-011 131940927-131943859 retained_intron
  ENST00000544213 PUS1-009 131929589-131932833 protein_coding
  ENST00000544662 PUS1-006 131929304-131932680 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322060ENST00000376649ENST00000443358ENST00000537484ENST00000538037ENST00000542167ENST00000543754ENST00000544213
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322060 1.852±0.00 9.330±0.00 0.578±0.00 1.603±0.00 2.769±1.10 3.266±0.00 N/A 4.819±0.00 N/A 3.848±0.00 N/A 7.827±6.45 4.393±0.00 8.067±0.00
ENST00000376649 0.502±0.00 N/A 0.035±0.00 N/A 0.902±0.00 0.459±0.18 N/A 0.770±0.66 1.062±0.00 0.462±0.00 0.100±0.00 1.382±0.56 0.587±0.18 1.217±0.28
ENST00000443358 2.195±0.00 7.901±0.00 N/A 2.391±0.00 3.013±0.00 1.756±0.86 1.273±0.00 4.871±0.00 7.198±0.00 2.032±0.00 7.066±0.00 6.802±3.44 5.456±1.88 5.110±0.81
ENST00000537484 N/A N/A N/A N/A N/A N/A 1.723±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000538037 N/A N/A 0.439±0.00 0.338±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542167 N/A N/A N/A 0.153±0.00 N/A N/A 0.063±0.00 0.785±0.00 0.069±0.00 N/A N/A 0.304±0.00 N/A N/A
ENST00000543754 N/A N/A N/A 0.669±0.33 1.761±0.00 1.788±0.00 N/A N/A 0.047±0.00 0.276±0.00 N/A 2.266±0.00 N/A N/A
ENST00000544213 2.376±0.00 N/A N/A N/A 1.633±0.00 N/A N/A N/A 0.127±0.00 0.258±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0004730 NAS pseudouridylate synthase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005730 IEA nucleolus
GO:0005739 IEA mitochondrion
GO:0008033 IEA tRNA processing
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0031119 IEA tRNA pseudouridine synthesis
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045562 pus1 pseudouridine synthase 1 protein_coding Danio_rerio
ENSMUSG00000029507 Pus1 pseudouridine synthase 1 protein_coding Mus_musculus

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