C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 212
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000178222 RNF212 9606 - 4:1056250-1113562 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333673 RNF212-004 1093308-1113530 protein_coding
  ENST00000382968 RNF212-001 1071478-1113562 protein_coding
  ENST00000433731 RNF212-002 1072756-1113526 protein_coding
  ENST00000454487 RNF212-009 1096463-1113547 retained_intron
  ENST00000503206 RNF212-015 1056254-1081603 processed_transcript
  ENST00000505693 RNF212-014 1056254-1081957 retained_intron
  ENST00000505730 RNF212-010 1100913-1113531 processed_transcript
  ENST00000506730 RNF212-011 1056913-1113540 nonsense_mediated_decay
  ENST00000508428 RNF212-008 1072851-1113515 nonsense_mediated_decay
  ENST00000508633 RNF212-013 1056866-1073754 retained_intron
  ENST00000510715 RNF212-003 1072922-1113541 nonsense_mediated_decay
  ENST00000511620 RNF212-006 1072756-1113526 nonsense_mediated_decay
  ENST00000512552 RNF212-005 1085710-1099860 retained_intron
  ENST00000514024 RNF212-016 1056250-1058427 retained_intron
  ENST00000514757 RNF212-012 1056254-1081957 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333673ENST00000382968ENST00000433731ENST00000454487ENST00000503206ENST00000505693ENST00000505730ENST00000506730ENST00000508428ENST00000508633ENST00000510715ENST00000511620ENST00000512552ENST00000514024ENST00000514757
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333673 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.358±0.00 0.053±0.00 N/A N/A N/A
ENST00000382968 N/A N/A 0.157±0.00 N/A 0.291±0.24 N/A 0.069±0.00 0.028±0.00 0.024±0.00 0.086±0.00 N/A 0.301±0.38 0.064±0.04 1.220±0.00
ENST00000433731 N/A N/A 0.243±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454487 N/A N/A 0.514±0.00 N/A N/A 0.623±0.00 N/A N/A 0.498±0.00 N/A N/A N/A N/A 2.970±0.00
ENST00000503206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.209±0.00 N/A N/A
ENST00000505693 0.373±0.00 N/A N/A N/A N/A 0.155±0.00 N/A N/A N/A 0.139±0.00 N/A N/A N/A N/A
ENST00000505730 0.403±0.00 1.686±0.00 N/A 0.412±0.00 N/A N/A 0.365±0.00 N/A 0.444±0.00 N/A 0.198±0.00 0.273±0.00 0.563±0.00 N/A
ENST00000506730 0.386±0.00 N/A N/A 0.298±0.00 0.239±0.00 N/A N/A 2.120±0.00 N/A N/A 0.066±0.00 1.859±0.00 0.254±0.04 N/A
ENST00000508428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.319±0.00 N/A
ENST00000508633 N/A N/A N/A N/A N/A N/A N/A N/A 0.158±0.00 N/A N/A N/A N/A N/A
ENST00000510715 N/A N/A N/A 0.130±0.00 N/A 0.407±0.00 N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A
ENST00000511620 N/A N/A N/A 0.245±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512552 N/A N/A N/A N/A N/A 0.637±0.00 N/A N/A N/A 0.756±0.00 N/A 0.056±0.00 N/A N/A
ENST00000514024 N/A N/A N/A 0.983±0.00 N/A N/A N/A N/A 0.163±0.00 N/A N/A 3.568±0.00 0.450±0.10 N/A
ENST00000514757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LP CIL_0006LP_0001 CGP 4:1009936-1113562

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000795 ISS synaptonemal complex
GO:0005515 IEA protein binding
GO:0006311 ISS meiotic gene conversion
GO:0007131 ISS reciprocal meiotic recombination
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0016925 IEA protein sumoylation
GO:0051026 ISS chiasma assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090319 BX005356.3 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000055385 Rnf212 ring finger protein 212 protein_coding Mus_musculus

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