C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000178719 GRINA 9606 + 8:143990058-143993415 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313269 GRINA-201 143990058-143993415 protein_coding
  ENST00000395068 GRINA-001 143990100-143993415 protein_coding
  ENST00000525513 GRINA-008 143991533-143992508 retained_intron
  ENST00000527194 GRINA-010 143991747-143993094 protein_coding
  ENST00000529301 GRINA-004 143990083-143992373 protein_coding
  ENST00000530898 GRINA-005 143990677-143991526 protein_coding
  ENST00000531992 GRINA-006 143991294-143991963 retained_intron
  ENST00000533044 GRINA-009 143991556-143992822 protein_coding
  ENST00000533377 GRINA-011 143992174-143992974 retained_intron
  ENST00000534791 GRINA-007 143991454-143992839 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313269ENST00000395068ENST00000527194ENST00000529301ENST00000533044ENST00000533377ENST00000534791
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313269 N/A N/A N/A 2.003±0.00 N/A N/A N/A 7.049±0.00 44.521±0.00 17.627±15.24 N/A N/A N/A N/A
ENST00000395068 52.214±0.00 21.324±0.00 3.175±0.00 25.036±21.05 35.405±30.93 14.041±12.34 8.098±7.10 81.792±0.00 31.102±29.36 66.580±0.00 18.475±15.81 79.828±46.07 87.139±33.73 66.686±34.70
ENST00000527194 69.658±0.00 N/A 8.256±0.00 28.700±23.18 64.052±0.00 20.288±0.00 12.618±10.66 72.453±52.52 55.761±51.41 54.007±46.28 27.053±22.41 71.548±0.00 64.550±6.83 69.110±0.00
ENST00000529301 42.495±0.00 N/A N/A 90.299±0.00 N/A 24.917±0.00 N/A N/A N/A N/A N/A N/A 27.302±0.00 N/A
ENST00000533044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.143±0.00 N/A N/A
ENST00000533377 113.741±0.00 72.044±0.00 N/A 55.660±47.15 105.144±0.00 29.330±25.90 N/A N/A N/A N/A N/A N/A N/A 109.365±0.00
ENST00000534791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 89.891±0.00 44.903±0.00 127.391±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307
CIL_0002GS CIL_0002GS_0001 CGP 8:143915147-144012772
CIL_0002GF CIL_0002GF_0001 CGP 8:143977153-144012772
CIL_0002GE CIL_0002GE_0001 CGP 8:143990058-144047085

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0016021 IEA integral component of membrane
GO:0032469 IEA endoplasmic reticulum calcium ion homeostasis
GO:0044325 IEA ion channel binding
GO:1902236 IEA negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052746 grina glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) protein_coding Danio_rerio
ENSDARG00000092332 GRINA (2 of 2) glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) protein_coding Danio_rerio
ENSMUSG00000022564 Grina glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) protein_coding Mus_musculus

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