C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: selenoprotein W, 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000178980 SEPW1 9606 + 19:47778572-47784686 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000509570 SEPW1-201 47778585-47784684 protein_coding
  ENST00000593892 SEPW1-006 47778677-47784564 protein_coding
  ENST00000595509 SEPW1-010 47779239-47780895 processed_transcript
  ENST00000595615 SEPW1-007 47778701-47781556 protein_coding
  ENST00000598083 SEPW1-012 47780756-47781408 retained_intron
  ENST00000598273 SEPW1-002 47778933-47784681 retained_intron
  ENST00000598956 SEPW1-011 47780388-47784648 retained_intron
  ENST00000599302 SEPW1-008 47778709-47780177 processed_transcript
  ENST00000599590 SEPW1-009 47778709-47779962 processed_transcript
  ENST00000599627 SEPW1-014 47781080-47784399 retained_intron
  ENST00000599874 SEPW1-004 47778683-47784457 nonsense_mediated_decay
  ENST00000601048 SEPW1-001 47778572-47784681 protein_coding
  ENST00000601419 SEPW1-005 47778691-47784654 processed_transcript
  ENST00000601937 SEPW1-013 47780815-47784686 retained_intron
  ENST00000602163 SEPW1-003 47782180-47784682 retained_intron
  ENST00000612212 SEPW1-202 47778585-47784684 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000509570ENST00000593892ENST00000595509ENST00000598273ENST00000598956ENST00000599627ENST00000601048ENST00000601419ENST00000601937ENST00000602163ENST00000612212
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000509570 16.269±0.00 47.069±0.00 N/A 235.184±0.00 68.365±0.00 267.614±0.00 76.204±0.00 39.313±0.00 N/A N/A 22.349±0.00 N/A N/A N/A
ENST00000593892 19.794±0.00 N/A 3.815±0.00 N/A N/A 4.175±0.00 88.537±84.84 N/A N/A 3.364±0.00 31.772±0.00 21.596±0.00 14.034±0.00 11.591±0.00
ENST00000595509 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.495±0.00 N/A 1.474±0.00 N/A N/A
ENST00000598273 N/A N/A N/A N/A 0.867±0.00 N/A N/A N/A N/A N/A N/A 4.923±0.00 N/A 2.069±0.00
ENST00000598956 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.252±0.00 N/A N/A N/A N/A
ENST00000599627 N/A N/A N/A N/A N/A N/A N/A 1.603±0.00 N/A N/A N/A N/A N/A N/A
ENST00000601048 N/A 42.729±0.00 N/A 42.213±0.00 9.745±0.00 N/A 6.924±0.00 N/A 20.471±0.00 107.044±0.00 N/A 76.379±4.26 37.819±18.31 76.481±0.00
ENST00000601419 N/A N/A 1.105±0.00 N/A N/A N/A N/A N/A 5.805±0.00 N/A N/A N/A 25.593±0.00 8.868±0.00
ENST00000601937 43.804±0.00 128.087±0.00 N/A 56.760±36.68 105.095±0.00 231.943±0.00 153.679±146.81 64.315±62.35 39.015±0.00 242.623±0.00 58.749±36.39 64.441±58.20 142.620±28.82 74.854±0.00
ENST00000602163 N/A N/A N/A N/A 0.827±0.00 N/A N/A 0.179±0.00 N/A 0.895±0.00 N/A N/A N/A N/A
ENST00000612212 N/A 96.716±0.00 N/A 16.247±0.00 103.662±0.00 11.696±0.00 N/A 17.075±14.70 12.602±0.00 3.333±0.00 71.527±0.00 58.626±57.25 36.407±8.82 21.397±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0008430 IEA selenium binding
GO:0016209 IEA antioxidant activity
GO:0045454 IEA cell redox homeostasis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035136 sepw1 selenoprotein W, 1 protein_coding Danio_rerio
ENSMUSG00000041571 Sepw1 selenoprotein W, muscle 1 protein_coding Mus_musculus

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