C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: enhancer of mRNA decapping 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179151 EDC3 9606 - 15:74630558-74696292 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315127 EDC3-001 74630558-74696043 protein_coding
  ENST00000426797 EDC3-003 74632509-74696020 protein_coding
  ENST00000562047 EDC3-008 74687130-74695701 processed_transcript
  ENST00000562174 EDC3-005 74635181-74655893 protein_coding
  ENST00000562974 EDC3-007 74640561-74671599 protein_coding
  ENST00000563009 EDC3-016 74655794-74695987 protein_coding
  ENST00000563292 EDC3-014 74671662-74695662 protein_coding
  ENST00000565602 EDC3-002 74632125-74696029 nonsense_mediated_decay
  ENST00000566119 EDC3-012 74675031-74696024 protein_coding
  ENST00000566219 EDC3-009 74635562-74696012 protein_coding
  ENST00000566243 EDC3-017 74671545-74696007 protein_coding
  ENST00000566828 EDC3-018 74671568-74695940 protein_coding
  ENST00000567813 EDC3-015 74674961-74695614 protein_coding
  ENST00000568176 EDC3-004 74632542-74696000 protein_coding
  ENST00000569007 EDC3-011 74674861-74695976 retained_intron
  ENST00000569561 EDC3-010 74656020-74696292 protein_coding
  ENST00000569606 EDC3-006 74632733-74635727 retained_intron
  ENST00000570138 EDC3-013 74671635-74695673 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315127ENST00000568176
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315127 5.456±0.00 10.623±0.00 4.316±0.00 7.703±0.00 6.559±0.00 3.952±3.48 5.614±0.00 1.432±0.00 4.627±0.00 4.856±0.00 11.863±5.19 7.824±1.18 22.576±4.63
ENST00000568176 N/A N/A 6.279±0.00 N/A N/A N/A N/A 2.010±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0001 VISTA 15:74278506-74880453

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0042802 IPI identical protein binding
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051931 edc3 enhancer of mRNA decapping 3 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000038957 Edc3 enhancer of mRNA decapping 3 homolog (S. cerevisiae) protein_coding Mus_musculus

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