C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CDC-like kinase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179335 CLK3 9606 + 15:74598500-74645414 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000345005 CLK3-001 74608372-74630201 protein_coding
  ENST00000395066 CLK3-003 74614994-74630126 protein_coding
  ENST00000454830 CLK3-008 74615796-74630200 retained_intron
  ENST00000483723 CLK3-002 74608372-74630201 nonsense_mediated_decay
  ENST00000561673 CLK3-025 74627984-74639716 processed_transcript
  ENST00000562078 CLK3-004 74623620-74630116 retained_intron
  ENST00000562389 CLK3-009 74614829-74620207 protein_coding
  ENST00000562626 CLK3-022 74628592-74629661 retained_intron
  ENST00000562670 CLK3-014 74619089-74622560 protein_coding
  ENST00000563112 CLK3-018 74621568-74622509 retained_intron
  ENST00000563297 CLK3-016 74615844-74625871 protein_coding
  ENST00000563418 CLK3-024 74628594-74645414 protein_coding
  ENST00000563842 CLK3-019 74624119-74628969 protein_coding
  ENST00000564096 CLK3-015 74619109-74625868 protein_coding
  ENST00000564353 CLK3-011 74598500-74608727 processed_transcript
  ENST00000564468 CLK3-020 74625853-74629962 nonsense_mediated_decay
  ENST00000566126 CLK3-010 74615892-74625825 protein_coding
  ENST00000566926 CLK3-023 74627438-74629285 protein_coding
  ENST00000567805 CLK3-021 74627617-74629136 processed_transcript
  ENST00000567992 CLK3-012 74605582-74608727 processed_transcript
  ENST00000568139 CLK3-013 74615839-74625967 protein_coding
  ENST00000568232 CLK3-005 74629161-74630118 retained_intron
  ENST00000568488 CLK3-027 74615855-74624969 protein_coding
  ENST00000568605 CLK3-007 74615872-74625894 retained_intron
  ENST00000569063 CLK3-026 74615836-74627401 nonsense_mediated_decay
  ENST00000569406 CLK3-006 74620222-74630195 retained_intron
  ENST00000570296 CLK3-017 74615915-74620737 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345005ENST00000395066ENST00000454830ENST00000562078ENST00000563418ENST00000564468ENST00000566126ENST00000566926ENST00000569063ENST00000569406
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345005 N/A N/A N/A 11.789±0.00 N/A 1.700±0.00 2.577±0.00 8.219±0.00 6.833±2.91 12.201±6.34 15.254±6.27 N/A
ENST00000395066 N/A 2.514±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454830 N/A N/A N/A N/A 0.499±0.00 N/A N/A 5.841±0.00 N/A 7.933±0.00 N/A N/A
ENST00000562078 N/A N/A N/A N/A N/A N/A 2.877±0.00 N/A N/A N/A N/A N/A
ENST00000563418 N/A 0.711±0.00 N/A N/A 0.216±0.00 0.896±0.00 N/A N/A 0.359±0.00 1.544±0.64 N/A 2.786±0.00
ENST00000564468 11.977±0.00 N/A 19.729±0.00 N/A N/A N/A 4.378±0.00 16.837±0.00 11.390±0.00 N/A N/A N/A
ENST00000566126 N/A N/A N/A N/A N/A N/A N/A N/A N/A 50.824±0.00 18.147±0.00 66.240±0.00
ENST00000566926 N/A N/A N/A N/A N/A N/A N/A N/A 7.930±0.00 N/A N/A N/A
ENST00000569063 17.104±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569406 N/A N/A 1.898±0.00 N/A N/A 1.293±0.00 N/A N/A N/A 11.134±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0001 VISTA 15:74278506-74880453

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IEA protein kinase activity
GO:0004674 ISS protein serine/threonine kinase activity
GO:0004712 IEA protein serine/threonine/tyrosine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006468 IDA:IEA protein phosphorylation
GO:0016020 IDA membrane
GO:0016301 IEA kinase activity
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0018108 IEA peptidyl-tyrosine phosphorylation
GO:0031410 IEA cytoplasmic vesicle
GO:0043484 IDA regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0045111 IDA intermediate filament cytoskeleton
GO:0046777 IEA protein autophosphorylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000032316 Clk3 CDC-like kinase 3 protein_coding Mus_musculus

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