C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 3B (BRIGHT-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179361 ARID3B 9606 + 15:74541177-74598131 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000346246 ARID3B-001 74541177-74598131 protein_coding
  ENST00000563567 ARID3B-006 74596596-74597977 processed_transcript
  ENST00000566147 ARID3B-004 74544350-74591408 protein_coding
  ENST00000566468 ARID3B-005 74591187-74593201 retained_intron
  ENST00000569680 ARID3B-002 74541264-74575017 retained_intron
  ENST00000622429 ARID3B-201 74541206-74598129 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000346246ENST00000563567ENST00000566147ENST00000569680ENST00000622429
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000346246 0.759±0.00 0.883±0.00 N/A 0.089±0.00 N/A 0.271±0.00 N/A N/A 0.463±0.00 0.245±0.00 0.088±0.00 1.827±1.48 9.231±1.63 9.972±0.32
ENST00000563567 N/A N/A N/A 0.320±0.00 N/A N/A N/A N/A 0.611±0.00 N/A 1.018±0.00 N/A N/A N/A
ENST00000566147 N/A N/A 1.495±0.00 0.535±0.00 1.679±0.00 3.000±0.00 N/A N/A N/A N/A 1.842±0.00 N/A N/A N/A
ENST00000569680 0.247±0.00 0.675±0.00 0.300±0.00 0.208±0.00 0.227±0.04 0.281±0.00 0.130±0.00 0.208±0.00 0.226±0.00 0.280±0.00 0.193±0.00 0.272±0.00 N/A N/A
ENST00000622429 N/A 1.302±0.00 N/A 0.219±0.00 0.566±0.00 0.728±0.00 0.285±0.00 0.460±0.02 0.313±0.00 1.746±0.00 0.276±0.19 0.856±0.00 2.916±0.70 5.428±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0001 VISTA 15:74278506-74880453

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 NAS:IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA:IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008150 ND biological_process
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070474 arid3b AT rich interactive domain 3B (Bright like) protein_coding Danio_rerio
ENSMUSG00000004661 Arid3b AT rich interactive domain 3B (BRIGHT-like) protein_coding Mus_musculus

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