C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphofurin acidic cluster sorting protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179364 PACS2 9606 + 14:105300563-105398147 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325438 PACS2-003 105314415-105395206 protein_coding
  ENST00000430725 PACS2-002 105300563-105394672 protein_coding
  ENST00000447393 PACS2-001 105314744-105398147 protein_coding
  ENST00000546915 PACS2-007 105336425-105367250 protein_coding
  ENST00000547217 PACS2-006 105314887-105394869 protein_coding
  ENST00000547903 PACS2-011 105381924-105391598 retained_intron
  ENST00000548265 PACS2-008 105314890-105348746 retained_intron
  ENST00000548796 PACS2-013 105390237-105393335 retained_intron
  ENST00000549030 PACS2-010 105388622-105391749 retained_intron
  ENST00000550790 PACS2-012 105392005-105393543 retained_intron
  ENST00000551692 PACS2-005 105368085-105395213 retained_intron
  ENST00000551743 PACS2-004 105383119-105395251 protein_coding
  ENST00000551801 PACS2-014 105391459-105394743 protein_coding
  ENST00000552138 PACS2-009 105355049-105370158 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325438ENST00000430725ENST00000447393ENST00000551692ENST00000552138
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325438 24.319±0.00 17.119±0.00 20.428±12.91 18.337±15.95 14.312±11.20 7.935±6.10 8.232±6.69 4.177±0.74 16.063±0.00 20.328±15.38 15.916±10.46 13.321±2.98 25.341±3.98
ENST00000430725 N/A N/A N/A N/A N/A N/A N/A N/A 2.703±0.00 N/A N/A N/A N/A
ENST00000447393 N/A 5.708±0.00 8.403±5.72 1.171±0.00 N/A N/A 3.634±0.00 N/A N/A N/A 6.421±0.00 N/A N/A
ENST00000551692 N/A N/A N/A N/A N/A N/A N/A N/A 2.433±0.00 N/A N/A N/A N/A
ENST00000552138 N/A N/A N/A 9.914±0.00 N/A N/A N/A N/A N/A N/A 23.765±14.74 36.336±0.00 119.059±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KK CIL_0001KK_0001 CGP 14:105172938-105315589
CIL_0005IK CIL_0005IK_0003 CGP 14:105209286-105315589
CIL_0004Q6 CIL_0004Q6_0001 CGP 14:105300563-105450106

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000045 IDA autophagic vacuole assembly
GO:0005739 IEA mitochondrion
GO:0005783 IDA endoplasmic reticulum
GO:0006915 IEA apoptotic process
GO:0016032 IEA viral process
GO:0034497 IDA protein localization to pre-autophagosomal structure
GO:0072661 IMP protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078185 pacs2 phosphofurin acidic cluster sorting protein 2 protein_coding Danio_rerio
ENSMUSG00000021143 Pacs2 phosphofurin acidic cluster sorting protein 2 protein_coding Mus_musculus

Loading