C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pipecolic acid oxidase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179761 PIPOX 9606 + 17:28950513-29057220 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323372 PIPOX-001 29042900-29057220 protein_coding
  ENST00000419875 PIPOX-006 29051956-29053660 processed_transcript
  ENST00000466889 PIPOX-015 29044218-29053592 protein_coding
  ENST00000469082 PIPOX-002 29044251-29055067 protein_coding
  ENST00000484308 PIPOX-014 29046640-29056225 processed_transcript
  ENST00000577182 PIPOX-003 28952439-29053133 processed_transcript
  ENST00000578748 PIPOX-010 28951860-29045007 processed_transcript
  ENST00000580241 PIPOX-011 28950513-29056683 processed_transcript
  ENST00000580383 PIPOX-012 28950620-29053446 processed_transcript
  ENST00000583215 PIPOX-013 28950643-29056683 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverOvaryPlacentaENST00000323372ENST00000484308
Transcript ID Bladder Brain Kidney Liver Ovary Placenta
ENST00000323372 18.274±0.00 4.419±3.15 33.660±0.00 50.959±0.00 2.499±0.99 N/A
ENST00000484308 N/A N/A N/A N/A N/A 8.232±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WH CIL_0000WH_0002 CGP 17:28897781-28951771
CIL_00076L CIL_00076L_0002 CGP 17:28950513-29057220

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005102 IPI receptor binding
GO:0005777 IDA peroxisome
GO:0008115 IDA:IEA sarcosine oxidase activity
GO:0016491 IEA oxidoreductase activity
GO:0033514 IDA L-lysine catabolic process to acetyl-CoA via L-pipecolate
GO:0046653 IEA tetrahydrofolate metabolic process
GO:0050031 IDA L-pipecolate oxidase activity
GO:0055114 IEA:IDA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055591 pipox pipecolic acid oxidase protein_coding Danio_rerio
ENSMUSG00000017453 Pipox pipecolic acid oxidase protein_coding Mus_musculus

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