C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family A (ABC1), member 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179869 ABCA13 9606 + 7:48171458-48647496 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000411975 ABCA13-003 48455063-48647496 protein_coding
  ENST00000417403 ABCA13-002 48171458-48272995 nonsense_mediated_decay
  ENST00000435451 ABCA13-005 48507872-48520145 protein_coding
  ENST00000435803 ABCA13-001 48171460-48647495 protein_coding
  ENST00000453246 ABCA13-004 48376442-48644718 nonsense_mediated_decay
  ENST00000484268 ABCA13-006 48313067-48404665 retained_intron
  ENST00000544596 ABCA13-008 48279276-48646283 protein_coding
  ENST00000611776 ABCA13-007 48279276-48627092 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000411975ENST00000417403ENST00000435803ENST00000453246ENST00000484268ENST00000544596ENST00000611776
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000411975 N/A 0.083±0.00 N/A 0.029±0.00 0.038±0.00 0.026±0.00 0.020±0.00 0.139±0.00 N/A 1.297±0.00 0.044±0.00 0.102±0.09 0.034±0.00 0.725±0.29
ENST00000417403 0.075±0.00 N/A 0.393±0.00 0.060±0.00 0.032±0.00 N/A N/A 0.113±0.00 N/A 1.455±0.00 N/A N/A N/A N/A
ENST00000435803 N/A N/A N/A 0.006±0.00 0.002±0.00 0.004±0.00 0.007±0.00 N/A N/A 0.531±0.02 N/A 0.027±0.00 N/A 0.023±0.00
ENST00000453246 N/A 0.071±0.00 N/A 0.089±0.00 0.044±0.00 0.027±0.00 0.048±0.00 0.095±0.00 N/A N/A N/A 0.174±0.00 0.033±0.00 0.364±0.00
ENST00000484268 N/A N/A 0.251±0.00 0.019±0.00 N/A N/A N/A 0.184±0.00 0.065±0.00 N/A N/A 0.050±0.00 N/A N/A
ENST00000544596 N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 0.744±0.00 N/A 0.035±0.04 N/A N/A
ENST00000611776 N/A N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S4 CIL_0000S4_0001 CGP 7:48088628-48647496
CIL_0000S3 CIL_0000S3_0001 CGP 7:48171458-49921950

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000004668 Abca13 ATP-binding cassette, sub-family A (ABC1), member 13 protein_coding Mus_musculus

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