C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: repulsive guidance molecule family member a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182175 RGMA 9606 - 15:93035273-93089204 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000329082 RGMA-001 93035273-93089204 protein_coding
  ENST00000425933 RGMA-201 93043406-93073710 protein_coding
  ENST00000542321 RGMA-007 93043416-93073148 protein_coding
  ENST00000543599 RGMA-202 93043406-93088523 protein_coding
  ENST00000554387 RGMA-005 93043417-93073680 nonsense_mediated_decay
  ENST00000555584 RGMA-012 93052272-93063069 processed_transcript
  ENST00000555598 RGMA-009 93052320-93088523 protein_coding
  ENST00000556658 RGMA-006 93044956-93073663 protein_coding
  ENST00000556950 RGMA-008 93072967-93088653 protein_coding
  ENST00000557301 RGMA-004 93044818-93074128 protein_coding
  ENST00000557420 RGMA-010 93044947-93073145 protein_coding
  ENST00000557608 RGMA-011 93066006-93073134 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000329082ENST00000425933ENST00000542321ENST00000543599ENST00000554387ENST00000555598ENST00000557301ENST00000557420
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000329082 N/A N/A N/A N/A N/A N/A 0.013±0.00 0.091±0.00 0.040±0.02 0.090±0.00 N/A N/A N/A N/A
ENST00000425933 N/A N/A N/A 4.839±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542321 13.570±0.00 11.380±0.00 0.114±0.00 12.086±7.98 8.630±5.69 19.109±17.84 6.510±0.00 N/A 0.522±0.00 1.683±1.54 27.986±24.27 7.636±6.64 1.861±0.38 36.981±12.00
ENST00000543599 N/A N/A N/A N/A N/A N/A 2.953±0.00 1.466±0.00 N/A N/A 6.665±2.36 N/A 0.610±0.00 N/A
ENST00000554387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.794±0.00 N/A N/A
ENST00000555598 N/A N/A N/A N/A N/A 1.818±0.00 0.629±0.00 N/A 1.694±0.00 N/A N/A 0.699±0.00 N/A N/A
ENST00000557301 N/A N/A N/A N/A N/A N/A 0.446±0.00 N/A N/A N/A N/A 0.485±0.00 N/A N/A
ENST00000557420 N/A N/A N/A N/A N/A N/A N/A 0.176±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001843 IEA neural tube closure
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0007411 TAS axon guidance
GO:0009986 IEA cell surface
GO:0015026 IEA coreceptor activity
GO:0030509 IEA BMP signaling pathway
GO:0030510 IEA regulation of BMP signaling pathway
GO:0031225 IEA anchored component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012248 rgma RGM domain family, member A protein_coding Danio_rerio
ENSMUSG00000070509 Rgma repulsive guidance molecule family member A protein_coding Mus_musculus

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