C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD51 paralog B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182185 RAD51B 9606 + 14:67819779-68730218 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000390683 RAD51B-201 67819812-67887326 protein_coding
  ENST00000460526 RAD51B-011 67887130-68497562 processed_transcript
  ENST00000468382 RAD51B-013 67908305-68468250 processed_transcript
  ENST00000469165 RAD51B-010 67887130-68497881 processed_transcript
  ENST00000471583 RAD51B-003 67819808-68478099 protein_coding
  ENST00000474051 RAD51B-007 67885733-67887550 retained_intron
  ENST00000478014 RAD51B-012 67887102-68683171 processed_transcript
  ENST00000479335 RAD51B-002 67819779-68478051 nonsense_mediated_decay
  ENST00000485181 RAD51B-006 67822165-67865087 protein_coding
  ENST00000487270 RAD51B-004 67819808-68595996 protein_coding
  ENST00000487861 RAD51B-001 67819779-68611565 protein_coding
  ENST00000488612 RAD51B-005 67819829-68730218 protein_coding
  ENST00000492236 RAD51B-008 67886756-68411457 processed_transcript
  ENST00000497460 RAD51B-009 67886598-68540249 processed_transcript
  ENST00000553334 RAD51B-014 67823520-67835106 protein_coding
  ENST00000553595 RAD51B-017 67865032-68683118 processed_transcript
  ENST00000553734 RAD51B-015 67843433-67887150 processed_transcript
  ENST00000554183 RAD51B-020 68387137-68497451 processed_transcript
  ENST00000554244 RAD51B-018 67887067-68683118 processed_transcript
  ENST00000554575 RAD51B-021 68411510-68470717 protein_coding
  ENST00000555782 RAD51B-022 68472033-68478101 processed_transcript
  ENST00000555907 RAD51B-016 67857892-67887212 processed_transcript
  ENST00000556251 RAD51B-023 68545562-68594988 processed_transcript
  ENST00000557045 RAD51B-019 68000279-68497257 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000390683ENST00000460526ENST00000468382ENST00000469165ENST00000471583ENST00000474051ENST00000478014ENST00000485181ENST00000487270ENST00000487861ENST00000488612ENST00000553334ENST00000553595ENST00000554183ENST00000554575ENST00000555782ENST00000556251
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000390683 N/A N/A N/A N/A N/A 0.367±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000460526 N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A N/A 1.307±0.00 0.680±0.00 N/A
ENST00000468382 N/A N/A N/A N/A N/A N/A 0.188±0.00 1.683±0.00 N/A N/A 2.294±0.00 N/A N/A
ENST00000469165 N/A N/A N/A 0.525±0.00 0.332±0.00 N/A 0.383±0.00 N/A 0.458±0.00 N/A N/A 0.341±0.00 0.621±0.32
ENST00000471583 N/A N/A 0.224±0.00 N/A N/A 0.102±0.00 0.278±0.00 N/A 1.077±0.83 N/A 0.780±0.00 N/A 0.154±0.00
ENST00000474051 N/A N/A N/A N/A N/A N/A 0.313±0.00 N/A N/A N/A N/A N/A N/A
ENST00000478014 N/A N/A N/A N/A N/A N/A N/A N/A 0.885±0.00 N/A N/A N/A N/A
ENST00000485181 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.141±0.00 N/A N/A N/A
ENST00000487270 N/A 0.311±0.00 0.118±0.02 N/A N/A 0.073±0.00 0.106±0.00 0.198±0.17 N/A N/A 1.234±0.20 0.349±0.00 0.250±0.00
ENST00000487861 N/A N/A 0.212±0.00 N/A 0.500±0.00 0.059±0.00 N/A N/A 0.276±0.00 N/A N/A 0.348±0.01 0.193±0.00
ENST00000488612 0.224±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.625±0.09 N/A
ENST00000553334 2.112±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.568±0.00
ENST00000553595 N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A
ENST00000554183 N/A N/A N/A N/A N/A 0.207±0.00 N/A 0.092±0.00 N/A N/A N/A 1.258±0.00 N/A
ENST00000554575 N/A N/A 2.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555782 N/A N/A N/A N/A 2.647±0.00 N/A N/A 0.098±0.00 N/A N/A 1.512±0.00 N/A 0.663±0.00
ENST00000556251 N/A N/A N/A N/A N/A 0.448±0.00 N/A N/A N/A 0.462±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CJ CIL_0002CJ_0001 CGP 14:67727374-68730218
CIL_0001JV CIL_0001JV_0002 CGP 14:67819779-68796253

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000400 IDA four-way junction DNA binding
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0003677 IEA DNA binding
GO:0003678 IEA DNA helicase activity
GO:0003690 IDA double-stranded DNA binding
GO:0003697 IDA:IEA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005657 IDA replication fork
GO:0006200 IEA ATP catabolic process
GO:0006259 IEA DNA metabolic process
GO:0006260 IEA DNA replication
GO:0006281 TAS:IEA DNA repair
GO:0006310 TAS DNA recombination
GO:0007131 TAS reciprocal meiotic recombination
GO:0007596 TAS blood coagulation
GO:0008094 IEA DNA-dependent ATPase activity
GO:0009432 IEA SOS response
GO:0010971 IMP positive regulation of G2/M transition of mitotic cell cycle
GO:0033063 IDA Rad51B-Rad51C-Rad51D-XRCC2 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037046 rad51b RAD51 homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000059060 Rad51b RAD51 homolog B protein_coding Mus_musculus

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