C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GTF2H2 family member C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183474 GTF2H2C 9606 + 5:69560208-69594723 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380729 GTF2H2C-004 69560247-69592525 protein_coding
  ENST00000446221 GTF2H2C-006 69560294-69592860 nonsense_mediated_decay
  ENST00000502599 GTF2H2C-016 69565133-69566486 retained_intron
  ENST00000502619 GTF2H2C-003 69560223-69579781 retained_intron
  ENST00000503604 GTF2H2C-008 69565369-69572550 retained_intron
  ENST00000505737 GTF2H2C-009 69560259-69565133 processed_transcript
  ENST00000506129 GTF2H2C-011 69560225-69585596 nonsense_mediated_decay
  ENST00000507595 GTF2H2C-013 69565122-69582420 protein_coding
  ENST00000508325 GTF2H2C-010 69562652-69567215 retained_intron
  ENST00000510979 GTF2H2C-001 69560242-69593767 protein_coding
  ENST00000511629 GTF2H2C-005 69560223-69570011 nonsense_mediated_decay
  ENST00000512736 GTF2H2C-007 69560208-69572844 protein_coding
  ENST00000513959 GTF2H2C-017 69593473-69594723 processed_transcript
  ENST00000514069 GTF2H2C-012 69560209-69578747 nonsense_mediated_decay
  ENST00000514162 GTF2H2C-014 69560247-69592246 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000502599ENST00000503604ENST00000506129ENST00000507595ENST00000510979ENST00000513959ENST00000514069
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000502599 N/A N/A N/A N/A N/A N/A N/A 2.449±0.00 N/A N/A N/A N/A N/A N/A
ENST00000503604 N/A N/A 0.457±0.00 N/A 0.775±0.00 0.427±0.00 N/A N/A 0.918±0.00 N/A N/A N/A N/A N/A
ENST00000506129 N/A N/A N/A N/A 0.763±0.00 0.700±0.00 N/A N/A N/A N/A N/A 0.168±0.00 0.212±0.00 N/A
ENST00000507595 N/A N/A N/A 0.876±0.00 N/A N/A N/A 1.112±0.00 0.836±0.00 N/A N/A 0.151±0.00 0.630±0.20 N/A
ENST00000510979 1.006±0.00 1.300±0.00 0.751±0.00 1.194±0.00 1.610±0.00 0.441±0.00 0.458±0.34 2.061±0.00 0.306±0.09 0.665±0.00 0.287±0.00 1.364±0.91 0.390±0.12 1.199±0.40
ENST00000513959 N/A 1.345±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.464±0.00 N/A N/A
ENST00000514069 N/A N/A N/A N/A N/A N/A N/A 0.696±0.00 N/A N/A N/A N/A 0.275±0.00 5.146±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K7 CIL_0005K7_0002 CGP 5:69492292-69594723

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000439 IEA core TFIIH complex
GO:0006281 IEA DNA repair
GO:0006289 IEA nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016514 gtf2h2 general transcription factor IIH, polypeptide 2 protein_coding Danio_rerio
ENSMUSG00000021639 Gtf2h2 general transcription factor II H, polypeptide 2 protein_coding Mus_musculus

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