C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183576 SETD3 9606 - 14:99397746-99480879 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000329331 SETD3-003 99409804-99480788 protein_coding
  ENST00000331768 SETD3-001 99397746-99480879 protein_coding
  ENST00000357563 SETD3-004 99411578-99480837 nonsense_mediated_decay
  ENST00000436070 SETD3-002 99411279-99480790 protein_coding
  ENST00000446066 SETD3-005 99398469-99480801 nonsense_mediated_decay
  ENST00000453764 SETD3-008 99405315-99480860 nonsense_mediated_decay
  ENST00000453938 SETD3-007 99458299-99478769 processed_transcript
  ENST00000489770 SETD3-006 99398732-99413250 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000329331ENST00000331768ENST00000446066
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000329331 N/A N/A N/A 26.666±0.00 8.240±0.00 10.123±0.00 9.936±0.00 14.218±0.00 20.359±0.00 16.424±0.00 13.872±0.00 15.596±0.00 N/A N/A
ENST00000331768 17.977±0.00 13.093±0.00 1.764±0.00 24.655±0.00 10.335±7.40 11.677±8.64 18.011±11.77 33.219±0.00 11.542±1.31 24.172±0.00 21.958±17.76 8.482±5.66 17.076±3.54 35.234±4.98
ENST00000446066 4.110±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.387±0.00 N/A N/A 19.751±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KT CIL_0007KT_0001 UCNEbase 14:98137606-99417500
CIL_0005H1 CIL_0005H1_0001 CGP 14:99169287-99480879
CIL_0009CK CIL_0009CK_0001 VISTA 14:99273315-99877989
CIL_0003HD CIL_0003HD_0001 CGP 14:99397746-99535044

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0001102 IEA RNA polymerase II activating transcription factor binding
GO:0003713 ISS transcription coactivator activity
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0010452 ISS histone H3-K36 methylation
GO:0018022 IEA peptidyl-lysine methylation
GO:0018023 ISS peptidyl-lysine trimethylation
GO:0018026 ISS peptidyl-lysine monomethylation
GO:0018027 ISS peptidyl-lysine dimethylation
GO:0042800 IEA histone methyltransferase activity (H3-K4 specific)
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046975 ISS histone methyltransferase activity (H3-K36 specific)
GO:0051149 IEA positive regulation of muscle cell differentiation
GO:0051568 IEA histone H3-K4 methylation
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016513 setd3 SET domain containing 3 protein_coding Danio_rerio
ENSMUSG00000056770 Setd3 SET domain containing 3 protein_coding Mus_musculus

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