C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin, gamma 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000184009 ACTG1 9606 - 17:81509971-81523847 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000331925 ACTG1-001 81509971-81512874 protein_coding
  ENST00000570382 ACTG1-014 81511519-81512799 protein_coding
  ENST00000571691 ACTG1-017 81511238-81512763 protein_coding
  ENST00000571721 ACTG1-013 81511498-81512778 protein_coding
  ENST00000572105 ACTG1-015 81510745-81512781 nonsense_mediated_decay
  ENST00000573283 ACTG1-003 81509988-81512780 protein_coding
  ENST00000574671 ACTG1-008 81509999-81511848 retained_intron
  ENST00000575087 ACTG1-002 81510008-81512790 protein_coding
  ENST00000575659 ACTG1-010 81511348-81514640 protein_coding
  ENST00000575842 ACTG1-012 81509989-81512781 protein_coding
  ENST00000575994 ACTG1-011 81511346-81523847 protein_coding
  ENST00000576209 ACTG1-009 81510005-81512150 retained_intron
  ENST00000576214 ACTG1-016 81511085-81512748 retained_intron
  ENST00000576544 ACTG1-006 81510013-81512791 nonsense_mediated_decay
  ENST00000576917 ACTG1-004 81509992-81512780 retained_intron
  ENST00000615544 ACTG1-201 81509973-81512755 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331925ENST00000570382ENST00000572105ENST00000574671ENST00000575087ENST00000576209ENST00000576544ENST00000615544
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331925 643.946±0.00 342.051±0.00 N/A 167.372±106.61 233.979±168.70 101.309±0.00 95.405±0.00 234.648±202.69 177.373±155.81 1181.530±0.00 145.239±0.00 1051.301±709.19 1279.870±23.11 473.968±0.00
ENST00000570382 N/A N/A 138.758±0.00 166.083±0.00 194.684±0.00 289.381±0.00 29.120±0.00 43.767±0.00 144.278±0.00 132.672±0.00 31.781±0.00 199.565±0.00 N/A N/A
ENST00000572105 N/A N/A 24.879±0.00 N/A 56.397±0.00 68.762±0.00 8.822±0.00 17.322±0.00 37.771±0.00 28.351±0.00 15.803±0.00 51.754±0.00 N/A N/A
ENST00000574671 N/A N/A 33.241±0.00 N/A N/A N/A N/A N/A N/A 24.499±0.00 18.416±0.00 N/A N/A N/A
ENST00000575087 N/A N/A 13.021±0.00 N/A N/A N/A N/A N/A 36.709±0.00 N/A N/A N/A N/A N/A
ENST00000576209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.242±0.00 895.136±0.00 950.837±501.54 187.119±0.00
ENST00000576544 N/A N/A 24.637±0.00 55.390±0.00 N/A N/A 8.168±0.00 N/A 24.067±0.00 60.682±0.00 11.358±0.00 73.339±0.00 N/A N/A
ENST00000615544 480.467±0.00 313.449±0.00 N/A 260.889±0.00 142.246±115.35 192.800±115.44 27.436±0.00 86.093±74.92 135.661±0.00 683.612±0.00 64.690±0.00 315.290±133.33 N/A 310.572±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YF CIL_0004YF_0001 CGP 17:81395475-81523847

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001895 IEP retina homeostasis
GO:0005200 IC structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0006928 TAS cellular component movement
GO:0007411 TAS axon guidance
GO:0015629 IEA actin cytoskeleton
GO:0016020 IDA membrane
GO:0030016 IEA myofibril
GO:0031941 IEA filamentous actin
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0042802 IPI identical protein binding
GO:0045087 TAS innate immune response
GO:0045214 IEA sarcomere organization
GO:0045216 TAS cell-cell junction organization
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:0070527 IMP platelet aggregation
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037746 actb1 actin, beta 1 protein_coding Danio_rerio
ENSDARG00000037870 actb2 actin, beta 2 protein_coding Danio_rerio
ENSMUSG00000062825 Actg1 actin, gamma, cytoplasmic 1 protein_coding Mus_musculus

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