C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000184226 PCDH9 9606 - 13:66302834-67230445 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000377861 PCDH9-002 67201015-67230445 protein_coding
  ENST00000377865 PCDH9-003 66302834-67229818 protein_coding
  ENST00000456367 PCDH9-004 66303345-67229818 protein_coding
  ENST00000544246 PCDH9-001 66302834-67230445 protein_coding
  ENST00000614931 PCDH9-005 66304956-66903605 nonsense_mediated_decay
  ENST00000617020 PCDH9-006 66304604-66306309 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377861ENST00000377865ENST00000456367ENST00000544246ENST00000617020
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377861 0.155±0.00 0.118±0.00 1.048±0.00 7.676±5.62 0.585±0.10 0.323±0.07 1.364±0.16 0.490±0.11 0.730±0.68 1.059±1.02 0.075±0.00 0.041±0.03 0.004±0.00 0.139±0.01
ENST00000377865 N/A N/A N/A N/A 0.421±0.00 N/A N/A 0.774±0.00 0.081±0.00 N/A N/A N/A N/A 0.197±0.00
ENST00000456367 N/A 0.250±0.00 0.845±0.00 N/A N/A N/A 1.007±0.00 N/A 0.915±0.00 N/A 0.133±0.00 N/A 0.031±0.00 N/A
ENST00000544246 0.471±0.00 0.116±0.00 N/A 18.016±5.22 2.113±0.00 0.985±0.00 N/A N/A N/A 0.183±0.00 0.152±0.00 0.067±0.01 0.022±0.00 0.317±0.05
ENST00000617020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.066±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HT CIL_0008HT_0001 VISTA 13:65735667-66336616

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030426 IEA growth cone
GO:0030900 IEA forebrain development
GO:0044291 IEA cell-cell contact zone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063264 PCDH9 protocadherin 9 protein_coding Danio_rerio
ENSMUSG00000055421 Pcdh9 protocadherin 9 protein_coding Mus_musculus

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