C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB11B, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185236 RAB11B 9606 + 19:8389981-8404434 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000328024 RAB11B-001 8390199-8404434 protein_coding
  ENST00000594216 RAB11B-002 8390393-8402924 protein_coding
  ENST00000598706 RAB11B-003 8390363-8400342 retained_intron
  ENST00000600719 RAB11B-004 8389981-8402550 protein_coding
  ENST00000601897 RAB11B-005 8390389-8402799 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328024ENST00000594216ENST00000598706ENST00000600719
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328024 84.566±0.00 79.241±0.00 8.511±0.00 52.336±35.52 38.616±31.27 34.460±28.22 38.260±37.02 36.161±29.01 22.936±16.70 40.749±32.49 27.701±23.18 61.308±49.03 83.743±19.83 68.900±19.12
ENST00000594216 N/A N/A N/A N/A N/A 2.517±0.00 1.760±0.00 6.632±0.00 N/A N/A N/A 2.000±0.00 N/A N/A
ENST00000598706 N/A N/A N/A N/A N/A N/A 2.725±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000600719 N/A N/A N/A N/A N/A N/A 1.997±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NQ CIL_0002NQ_0001 CGP 19:7926718-8445041
CIL_0000UT CIL_0000UT_0001 CGP 19:7958579-8445041

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001881 ISS receptor recycling
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IDA:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008021 ISS synaptic vesicle
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016023 IEA cytoplasmic membrane-bounded vesicle
GO:0019003 IDA GDP binding
GO:0030054 IEA cell junction
GO:0031489 IPI myosin V binding
GO:0032402 ISS melanosome transport
GO:0033572 ISS transferrin transport
GO:0035773 ISS insulin secretion involved in cellular response to glucose stimulus
GO:0044070 IMP regulation of anion transport
GO:0045054 IMP constitutive secretory pathway
GO:0045055 ISS regulated secretory pathway
GO:0045335 IDA phagocytic vesicle
GO:0055037 ISS recycling endosome
GO:0055038 IEA recycling endosome membrane
GO:0070062 IDA extracellular vesicular exosome
GO:0071468 IDA cellular response to acidic pH
GO:0090150 IMP establishment of protein localization to membrane
GO:1990126 IMP retrograde transport, endosome to plasma membrane
GO:2000008 IMP regulation of protein localization to cell surface
GO:2001135 ISS regulation of endocytic recycling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023324 rab11bb RAB11B, member RAS oncogene family, b protein_coding Danio_rerio
ENSDARG00000090086 rab11bb RAB11B, member RAS oncogene family, b protein_coding Danio_rerio
ENSMUSG00000077450 Rab11b RAB11B, member RAS oncogene family protein_coding Mus_musculus

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