C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185272 RBM11 9606 + 21:14216130-14228372 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000400577 RBM11-001 14216178-14228372 protein_coding
  ENST00000461088 RBM11-005 14216154-14221453 retained_intron
  ENST00000468643 RBM11-002 14216130-14228372 processed_transcript
  ENST00000468788 RBM11-004 14216145-14227054 processed_transcript
  ENST00000475864 RBM11-006 14224375-14227384 processed_transcript
  ENST00000495055 RBM11-003 14216153-14228173 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000400577ENST00000461088ENST00000468643ENST00000468788ENST00000475864ENST00000495055
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000400577 N/A 0.316±0.00 N/A 0.973±0.05 N/A N/A N/A 0.340±0.00 0.248±0.00 0.409±0.00 N/A 0.488±0.00 0.033±0.00 1.346±0.00
ENST00000461088 N/A 0.236±0.00 N/A N/A N/A N/A 0.048±0.00 N/A 0.260±0.00 N/A N/A N/A 0.086±0.00 N/A
ENST00000468643 N/A N/A N/A 0.412±0.00 N/A 0.024±0.00 N/A N/A N/A N/A N/A 0.266±0.00 N/A N/A
ENST00000468788 0.256±0.00 N/A N/A 1.787±0.00 N/A 0.284±0.10 0.047±0.00 N/A N/A N/A N/A 0.700±0.64 0.079±0.00 2.498±0.00
ENST00000475864 0.420±0.00 N/A N/A 5.754±0.00 N/A N/A 0.070±0.00 0.432±0.00 1.272±0.00 0.382±0.00 N/A 0.111±0.08 0.148±0.01 2.087±0.00
ENST00000495055 N/A 0.206±0.00 0.518±0.00 1.005±0.00 0.228±0.11 0.147±0.00 0.057±0.00 0.266±0.00 N/A N/A 0.080±0.00 0.682±0.07 0.049±0.00 0.590±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MR CIL_0000MR_0002 CGP 21:14108813-14228372
CIL_00066K CIL_00066K_0001 CGP 21:14216130-14383484

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0006397 IEA mRNA processing
GO:0007275 IEA multicellular organismal development
GO:0008266 IDA poly(U) RNA binding
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0030154 IEA cell differentiation
GO:0034599 IDA cellular response to oxidative stress
GO:0042803 IDA protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090202 RBM11 RNA binding motif protein 11 protein_coding Danio_rerio
ENSMUSG00000032940 Rbm11 RNA binding motif protein 11 protein_coding Mus_musculus

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