C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine-rich repeats and calponin homology (CH) domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000186001 LRCH3 9606 + 3:197791226-197888436 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334859 LRCH3-004 197791274-197871585 protein_coding
  ENST00000414675 LRCH3-003 197791264-197883772 protein_coding
  ENST00000425562 LRCH3-006 197791279-197884302 protein_coding
  ENST00000428136 LRCH3-009 197866215-197883376 protein_coding
  ENST00000433298 LRCH3-017 197848001-197883998 protein_coding
  ENST00000438796 LRCH3-001 197791235-197888436 protein_coding
  ENST00000441090 LRCH3-002 197791264-197883813 protein_coding
  ENST00000443727 LRCH3-011 197791226-197829616 nonsense_mediated_decay
  ENST00000452660 LRCH3-015 197847959-197880559 protein_coding
  ENST00000461674 LRCH3-014 197847845-197870176 retained_intron
  ENST00000466054 LRCH3-021 197871423-197876340 retained_intron
  ENST00000466845 LRCH3-023 197854390-197859439 retained_intron
  ENST00000471667 LRCH3-018 197858818-197880625 retained_intron
  ENST00000473177 LRCH3-020 197858822-197880612 retained_intron
  ENST00000476664 LRCH3-022 197875694-197883685 retained_intron
  ENST00000481048 LRCH3-016 197852328-197866179 retained_intron
  ENST00000483442 LRCH3-019 197858821-197875760 retained_intron
  ENST00000493726 LRCH3-012 197820333-197823465 processed_transcript
  ENST00000494069 LRCH3-013 197835797-197848499 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000334859ENST00000414675ENST00000425562ENST00000428136ENST00000438796
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000334859 N/A N/A 1.711±0.00 2.473±0.00 3.013±0.00 2.162±0.00 2.044±0.00 3.295±0.00 7.423±0.00 5.736±0.00 3.050±0.58 2.696±0.00 9.708±0.00
ENST00000414675 N/A N/A N/A N/A N/A N/A N/A 2.553±0.00 3.421±0.00 N/A N/A N/A N/A
ENST00000425562 1.094±0.00 N/A N/A N/A 2.157±0.00 1.581±0.00 2.546±0.00 0.935±0.00 1.846±0.00 N/A N/A N/A 4.202±0.00
ENST00000428136 N/A N/A N/A 2.406±0.00 N/A N/A N/A N/A N/A 1.393±0.00 N/A N/A 2.778±0.00
ENST00000438796 N/A 4.192±0.00 N/A N/A N/A 1.043±0.00 0.752±0.00 N/A N/A 0.877±0.00 1.158±0.01 N/A 2.893±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C7 CIL_0006C7_0001 CGP 3:197737179-197888436
CIL_0006C8 CIL_0006C8_0001 CGP 3:197791226-197960142

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075769 LRCH3 leucine-rich repeats and calponin homology (CH) domain containing 3 protein_coding Danio_rerio
ENSMUSG00000022801 Lrch3 leucine-rich repeats and calponin homology (CH) domain containing 3 protein_coding Mus_musculus

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