C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein 546
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187187 ZNF546 9606 + 19:39984134-40017607 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000347077 ZNF546-001 39997076-40017607 protein_coding
  ENST00000593687 ZNF546-006 39997038-39999830 retained_intron
  ENST00000595225 ZNF546-008 39997236-40008545 protein_coding
  ENST00000596894 ZNF546-009 39997036-40016809 protein_coding
  ENST00000597363 ZNF546-007 39984134-39998303 processed_transcript
  ENST00000599504 ZNF546-005 39997036-40013803 protein_coding
  ENST00000600094 ZNF546-002 39997063-40016545 protein_coding
  ENST00000601138 ZNF546-004 39997060-40011348 protein_coding
  ENST00000602253 ZNF546-003 39997120-39998550 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000347077ENST00000596894ENST00000597363ENST00000599504ENST00000600094ENST00000601138
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000347077 N/A N/A N/A N/A N/A N/A 0.377±0.00 N/A N/A 0.020±0.00 N/A 0.034±0.00 N/A
ENST00000596894 N/A N/A N/A N/A N/A N/A N/A 0.644±0.00 N/A 0.277±0.00 N/A N/A N/A
ENST00000597363 N/A N/A N/A 1.256±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599504 N/A N/A 0.766±0.00 N/A N/A N/A N/A 2.344±0.00 N/A N/A N/A N/A N/A
ENST00000600094 0.124±0.00 0.496±0.00 N/A 0.212±0.00 0.121±0.00 0.434±0.00 0.310±0.00 0.073±0.00 0.104±0.00 0.138±0.05 0.426±0.07 0.143±0.05 4.151±2.62
ENST00000601138 0.850±0.00 N/A N/A N/A 1.026±0.00 N/A 4.729±0.00 0.520±0.00 1.055±0.54 N/A 0.463±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003UL CIL_0003UL_0003 CGP 19:39984134-40056209

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IBA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA:IBA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074922 zgc:174649 zgc:174649 protein_coding Danio_rerio
ENSDARG00000075470 zgc:110238 zgc:110238 protein_coding Danio_rerio
ENSDARG00000075834 si:dkey-182i3.8 si:dkey-182i3.8 protein_coding Danio_rerio
ENSDARG00000086182 si:dkey-54f18.1 si:dkey-54f18.1 protein_coding Danio_rerio
ENSDARG00000086278 CABZ01050664.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000086368 BX663505.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000086510 si:ch211-207e19.14 si:ch211-207e19.14 protein_coding Danio_rerio
ENSDARG00000086720 zgc:173603 zgc:173603 protein_coding Danio_rerio
ENSDARG00000086845 CABZ01021430.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000086975 CR812792.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000087249 si:dkey-7i4.17 si:dkey-7i4.17 protein_coding Danio_rerio
ENSDARG00000087320 CABZ01017734.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000087355 BX294653.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000087700 si:ch211-229l10.12 si:ch211-229l10.12 protein_coding Danio_rerio
ENSDARG00000087824 BX324179.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000087864 BX511066.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088378 si:dkeyp-4f2.4 si:dkeyp-4f2.4 protein_coding Danio_rerio
ENSDARG00000089186 CR388390.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000089344 BX640461.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000089363 CABZ01002718.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000089587 CR450785.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090043 CABZ01054392.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090377 CABZ01003344.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090400 CR388363.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090420 BX511078.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090979 si:dkey-78o7.1 si:dkey-78o7.1 protein_coding Danio_rerio
ENSDARG00000091284 si:dkey-78k22.1 si:dkey-78k22.1 protein_coding Danio_rerio
ENSDARG00000091364 si:dkey-77p23.3 si:dkey-77p23.3 protein_coding Danio_rerio
ENSDARG00000091524 si:ch211-162i8.3 si:ch211-162i8.3 protein_coding Danio_rerio
ENSDARG00000091688 si:dkey-54f18.1 si:dkey-54f18.1 protein_coding Danio_rerio
ENSDARG00000091793 CABZ01071911.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000092000 si:ch211-286l10.1 si:ch211-286l10.1 protein_coding Danio_rerio
ENSDARG00000092215 BX901907.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000092244 BX005085.4 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000092268 CT573263.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000092435 BX640584.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000093143 si:dkey-77f5.5 si:dkey-77f5.5 protein_coding Danio_rerio
ENSDARG00000093500 si:ch211-120c15.2 si:ch211-120c15.2 protein_coding Danio_rerio
ENSDARG00000094175 si:dkey-29p23.3 si:dkey-29p23.3 protein_coding Danio_rerio
ENSDARG00000094313 CT027609.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000094430 si:dkey-238o14.5 si:dkey-238o14.5 protein_coding Danio_rerio
ENSDARG00000094459 si:dkey-16p19.10 si:dkey-16p19.10 protein_coding Danio_rerio
ENSDARG00000094872 CR356223.5 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000095440 si:dkeyp-53e4.2 si:dkeyp-53e4.2 protein_coding Danio_rerio
ENSDARG00000095708 si:dkey-77f5.16 si:dkey-77f5.16 protein_coding Danio_rerio
ENSDARG00000096123 si:dkey-14o6.4 si:dkey-14o6.4 protein_coding Danio_rerio
ENSDARG00000096171 si:dkey-9i5.4 si:dkey-9i5.4 protein_coding Danio_rerio

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