C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytochrome P450, family 26, subfamily C, polypeptide 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187553 CYP26C1 9606 + 10:93060808-93069536 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000285949 CYP26C1-001 93061264-93068697 protein_coding
  ENST00000624358 CYP26C1-002 93060808-93069536 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastLiverLungMuscleOvaryPlacentaTestisENST00000285949ENST00000624358
Transcript ID Adipose Adrenal Brain Breast Liver Lung Muscle Ovary Placenta Testis
ENST00000285949 0.179±0.00 0.095±0.00 0.177±0.00 N/A N/A N/A N/A 0.062±0.01 0.149±0.01 0.106±0.07
ENST00000624358 N/A 0.036±0.00 0.091±0.05 0.013±0.01 0.048±0.00 0.014±0.00 0.024±0.00 0.014±0.01 0.024±0.01 0.050±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZW CIL_0000ZW_0001 CGP 10:92834713-93069536
CIL_0000ZX CIL_0000ZX_0001 CGP 10:93060808-93077890

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001972 IDA retinoic acid binding
GO:0005506 IEA iron ion binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006766 TAS vitamin metabolic process
GO:0006805 TAS xenobiotic metabolic process
GO:0007417 ISS central nervous system development
GO:0008401 IDA retinoic acid 4-hydroxylase activity
GO:0009952 ISS anterior/posterior pattern specification
GO:0014032 ISS neural crest cell development
GO:0016021 IEA integral component of membrane
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 IEA heme binding
GO:0034653 IDA retinoic acid catabolic process
GO:0044281 TAS small molecule metabolic process
GO:0048284 ISS organelle fusion
GO:0048387 NAS negative regulation of retinoic acid receptor signaling pathway
GO:0055114 IDA:IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000062432 Cyp26c1 cytochrome P450, family 26, subfamily c, polypeptide 1 protein_coding Mus_musculus

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