C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ArfGAP with GTPase domain, ankyrin repeat and PH domain 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188234 AGAP4 9606 - 10:45825594-45853875 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311652 AGAP4-201 45825607-45847347 protein_coding
  ENST00000430779 AGAP4-003 45827340-45853875 processed_transcript
  ENST00000448048 AGAP4-001 45825594-45847473 protein_coding
  ENST00000490752 AGAP4-005 45844266-45847326 retained_intron
  ENST00000492347 AGAP4-002 45831394-45847227 protein_coding
  ENST00000495243 AGAP4-004 45841526-45844503 retained_intron
  ENST00000616763 AGAP4-202 45825602-45847757 protein_coding
  ENST00000618171 AGAP4-203 45825694-45847459 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311652ENST00000430779ENST00000448048ENST00000490752ENST00000495243ENST00000616763ENST00000618171
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311652 N/A N/A N/A N/A 0.279±0.00 N/A 0.032±0.00 0.205±0.00 N/A N/A N/A N/A 0.094±0.05 N/A
ENST00000430779 N/A 0.280±0.00 N/A 0.109±0.00 0.697±0.00 0.076±0.00 0.131±0.03 0.113±0.00 0.324±0.18 0.118±0.00 N/A 0.529±0.28 0.051±0.00 N/A
ENST00000448048 N/A N/A N/A 0.060±0.00 0.193±0.00 N/A 0.099±0.00 N/A N/A N/A N/A 0.567±0.51 N/A 0.157±0.03
ENST00000490752 N/A N/A N/A 1.221±0.00 4.716±0.00 0.214±0.00 N/A N/A 0.425±0.00 3.454±0.00 N/A 3.264±2.20 N/A 1.077±0.00
ENST00000495243 0.267±0.00 0.687±0.00 N/A 0.554±0.00 4.870±0.00 N/A 0.107±0.00 1.798±1.50 1.615±0.00 0.414±0.00 0.873±0.70 1.679±1.40 0.078±0.00 1.018±0.00
ENST00000616763 0.111±0.00 0.349±0.00 0.377±0.00 0.107±0.00 0.283±0.00 0.097±0.00 N/A 0.179±0.00 0.220±0.00 0.350±0.21 0.059±0.00 0.535±0.40 0.161±0.00 0.327±0.01
ENST00000618171 N/A N/A N/A 0.553±0.00 N/A N/A 0.034±0.00 N/A 0.103±0.02 0.073±0.00 N/A N/A 0.035±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081B CIL_00081B_0001 VISTA 10:45257434-45860222

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062123 agap1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein_coding Danio_rerio

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