C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: opticin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188770 OPTC 9606 + 1:203494143-203508864 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367222 OPTC-001 203494143-203508864 protein_coding
  ENST00000448911 OPTC-002 203495970-203499709 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonOvaryTestisENST00000367222ENST00000448911
Transcript ID Adrenal Breast Colon Ovary Testis
ENST00000367222 0.070±0.00 0.137±0.00 0.018±0.00 0.067±0.00 0.129±0.02
ENST00000448911 N/A N/A N/A 0.052±0.03 0.126±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096T CIL_00096T_0001 VISTA 1:203391843-203993678

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005201 TAS extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0016525 IEA negative regulation of angiogenesis
GO:0031012 IEA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014358 optc opticin protein_coding Danio_rerio
ENSMUSG00000010311 Optc opticin protein_coding Mus_musculus

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