C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Fas (TNFRSF6) binding factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188878 FBF1 9606 - 17:75909574-75941140 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319129 FBF1-201 75910537-75941038 protein_coding
  ENST00000389570 FBF1-202 75909844-75941025 protein_coding
  ENST00000585990 FBF1-002 75909844-75941140 retained_intron
  ENST00000586112 FBF1-008 75913479-75914140 retained_intron
  ENST00000586631 FBF1-004 75937712-75940947 protein_coding
  ENST00000586717 FBF1-001 75909574-75941038 protein_coding
  ENST00000586838 FBF1-005 75920273-75923473 nonsense_mediated_decay
  ENST00000588283 FBF1-007 75912191-75917761 nonsense_mediated_decay
  ENST00000588478 FBF1-010 75938173-75941056 processed_transcript
  ENST00000590264 FBF1-009 75909581-75913780 protein_coding
  ENST00000592193 FBF1-003 75910723-75937594 protein_coding
  ENST00000593076 FBF1-006 75914035-75915043 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungOvaryTestisENST00000319129ENST00000585990ENST00000586631ENST00000586717ENST00000592193ENST00000593076
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Ovary Testis
ENST00000319129 0.204±0.00 0.370±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000585990 N/A 0.403±0.00 1.776±0.00 N/A 3.786±0.00 0.386±0.00 2.333±0.00 N/A 7.243±0.00
ENST00000586631 0.923±0.00 N/A N/A 1.276±0.00 N/A N/A N/A N/A N/A
ENST00000586717 N/A N/A N/A N/A N/A N/A N/A 3.272±0.00 5.316±0.00
ENST00000592193 N/A N/A 0.257±0.00 0.209±0.00 N/A N/A N/A N/A N/A
ENST00000593076 0.511±0.00 N/A N/A N/A N/A N/A N/A 1.352±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0001 VISTA 17:75822026-76422503
CIL_00078W CIL_00078W_0001 CGP 17:75909574-75979363

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000922 IDA spindle pole
GO:0003824 IEA catalytic activity
GO:0005515 IPI protein binding
GO:0005814 IDA centriole
GO:0042384 IMP cilium assembly
GO:0043296 IDA apical junction complex
GO:0043297 IMP apical junction assembly
GO:0044237 IEA cellular metabolic process
GO:0045095 IDA keratin filament
GO:0090162 IMP establishment of epithelial cell polarity
GO:0097539 IDA ciliary transition fiber

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029351 FBF1 (1 of 2) Fas (TNFRSF6) binding factor 1 protein_coding Danio_rerio
ENSDARG00000090482 FBF1 (2 of 2) Fas (TNFRSF6) binding factor 1 protein_coding Danio_rerio
ENSMUSG00000020776 Fbf1 Fas (TNFRSF6) binding factor 1 protein_coding Mus_musculus

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