C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ligand dependent nuclear receptor corepressor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196233 LCOR 9606 + 10:96832260-96981043 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356016 LCOR-010 96832955-96958891 protein_coding
  ENST00000371097 LCOR-009 96832980-96958926 protein_coding
  ENST00000371103 LCOR-015 96832282-96958933 protein_coding
  ENST00000463415 LCOR-012 96949223-96958515 processed_transcript
  ENST00000469510 LCOR-013 96907286-96908090 retained_intron
  ENST00000493486 LCOR-011 96907285-96949126 processed_transcript
  ENST00000498444 LCOR-014 96949142-96981043 processed_transcript
  ENST00000540664 LCOR-201 96832260-96964431 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356016ENST00000371103ENST00000540664
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.756±0.00 N/A N/A N/A
ENST00000371103 N/A N/A 1.904±0.00 N/A 2.407±0.00 2.256±0.00 0.741±0.00 N/A N/A N/A N/A N/A 0.433±0.00 N/A
ENST00000540664 0.549±0.00 0.669±0.00 N/A 0.368±0.00 0.675±0.00 0.360±0.00 0.442±0.12 1.859±0.00 0.288±0.00 0.666±0.00 0.303±0.10 1.388±0.00 0.662±0.47 1.391±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GA CIL_0003GA_0001 CGP 10:96593312-96981043
CIL_0008SO CIL_0008SO_0001 VISTA 10:96654859-97255972
CIL_0005ID CIL_0005ID_0001 CGP 10:96832260-96986212

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0008134 IEA transcription factor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070907 lcor ligand dependent nuclear receptor corepressor protein_coding Danio_rerio
ENSMUSG00000025019 Lcor ligand dependent nuclear receptor corepressor protein_coding Mus_musculus

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