C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: estrogen-related receptor gamma
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196482 ESRRG 9606 - 1:216503246-217137755 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359162 ESRRG-004 216503254-217089605 protein_coding
  ENST00000360012 ESRRG-005 216503254-216805367 protein_coding
  ENST00000361395 ESRRG-002 216503254-216939673 protein_coding
  ENST00000361525 ESRRG-201 216503246-217089645 protein_coding
  ENST00000366937 ESRRG-006 216503254-216723453 protein_coding
  ENST00000366938 ESRRG-007 216503254-216939673 protein_coding
  ENST00000366940 ESRRG-003 216503251-217137755 protein_coding
  ENST00000391890 ESRRG-202 216503246-216723472 protein_coding
  ENST00000408911 ESRRG-001 216503254-216723453 protein_coding
  ENST00000459825 ESRRG-020 216865117-217089613 processed_transcript
  ENST00000459955 ESRRG-016 216677312-216723452 protein_coding
  ENST00000463665 ESRRG-011 216505454-217076931 protein_coding
  ENST00000469486 ESRRG-017 216677201-216723416 protein_coding
  ENST00000469913 ESRRG-018 216707420-216723429 processed_transcript
  ENST00000471371 ESRRG-009 216862230-217089636 processed_transcript
  ENST00000475275 ESRRG-008 216519152-216723332 protein_coding
  ENST00000477799 ESRRG-015 216855042-217078360 processed_transcript
  ENST00000481543 ESRRG-019 216677328-216723425 protein_coding
  ENST00000487276 ESRRG-013 216505490-216939670 protein_coding
  ENST00000488947 ESRRG-014 216865061-217090547 processed_transcript
  ENST00000493603 ESRRG-010 216503254-217137754 protein_coding
  ENST00000493748 ESRRG-012 216506788-217076889 protein_coding
  ENST00000586199 ESRRG-023 216567988-217078288 nonsense_mediated_decay
  ENST00000616180 ESRRG-203 216503246-216715253 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000359162ENST00000360012ENST00000361395ENST00000361525ENST00000366937ENST00000366940ENST00000408911ENST00000471371ENST00000475275ENST00000487276ENST00000488947ENST00000493603ENST00000493748ENST00000616180
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000359162 N/A N/A N/A 2.169±0.67 0.049±0.00 0.140±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000360012 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.288±0.00 N/A N/A N/A
ENST00000361395 N/A N/A N/A N/A N/A N/A N/A 1.865±0.00 N/A N/A N/A N/A N/A
ENST00000361525 N/A N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000366937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.191±0.00
ENST00000366940 N/A 0.034±0.00 N/A 0.542±0.00 0.146±0.00 0.238±0.00 1.112±0.00 N/A N/A N/A 0.228±0.00 N/A 0.070±0.00
ENST00000408911 N/A N/A N/A 0.552±0.00 0.192±0.00 N/A 2.796±1.19 N/A 0.293±0.00 0.841±0.44 0.136±0.00 2.223±0.68 N/A
ENST00000471371 0.013±0.00 0.041±0.00 3.609±0.00 N/A 0.160±0.00 N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A
ENST00000475275 N/A N/A N/A N/A N/A 0.220±0.00 4.072±0.00 N/A N/A 1.304±0.00 N/A N/A N/A
ENST00000487276 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.581±0.00
ENST00000488947 N/A N/A N/A N/A 1.648±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493603 N/A N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493748 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.890±0.00 N/A N/A N/A
ENST00000616180 N/A N/A N/A N/A N/A N/A N/A 0.817±0.73 N/A N/A 0.032±0.00 N/A 0.080±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000127 CIL_000127_0002 CGP 1:215622894-217137755
CIL_0007JY CIL_0007JY_0001 UCNEbase 1:215651193-218349979
CIL_0008DN CIL_0008DN_0001 VISTA 1:216299074-216900116
CIL_000122 CIL_000122_0002 CGP 1:216503246-217631082

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003708 IEA retinoic acid receptor activity
GO:0005496 IEA steroid binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA:IDA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048384 IEA retinoic acid receptor signaling pathway
GO:0050682 ISS AF-2 domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004861 esrrga estrogen-related receptor gamma a protein_coding Danio_rerio
ENSDARG00000011696 esrrgb estrogen-related receptor gamma b protein_coding Danio_rerio
ENSMUSG00000026610 Esrrg estrogen-related receptor gamma protein_coding Mus_musculus

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