C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ganglioside induced differentiation associated protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196505 GDAP2 9606 - 1:117863485-117929630 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369442 GDAP2-002 117877222-117929583 protein_coding
  ENST00000369443 GDAP2-001 117863485-117929630 protein_coding
  ENST00000464026 GDAP2-006 117882904-117899130 processed_transcript
  ENST00000491626 GDAP2-005 117870184-117887733 processed_transcript
  ENST00000493555 GDAP2-004 117896616-117920207 processed_transcript
  ENST00000494224 GDAP2-003 117912530-117929560 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369442ENST00000369443ENST00000491626ENST00000493555
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369442 N/A N/A N/A 1.351±0.98 2.538±0.00 2.182±0.00 0.460±0.00 N/A 0.336±0.00 3.585±0.00 N/A 1.023±0.00 0.661±0.12 1.968±0.00
ENST00000369443 1.374±0.00 0.209±0.00 3.625±0.00 0.820±0.74 1.556±0.70 3.589±0.00 0.583±0.00 1.589±1.13 6.716±0.00 4.644±0.00 0.581±0.34 1.362±1.29 0.488±0.12 0.871±0.24
ENST00000491626 N/A N/A N/A N/A N/A 1.860±0.00 N/A 2.901±0.00 N/A N/A 0.659±0.00 2.239±0.00 2.211±0.61 5.761±1.14
ENST00000493555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.826±0.00 1.808±0.95 5.891±1.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A1 CIL_0008A1_0001 VISTA 1:117312950-117913675
CIL_0008HM CIL_0008HM_0001 VISTA 1:117358424-117964281
CIL_00012Q CIL_00012Q_0002 CGP 1:117605934-117929630
CIL_00012R CIL_00012R_0002 CGP 1:117863485-117966542

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005765 IDA lysosomal membrane
GO:0032526 IEA response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021569 gdap2 ganglioside induced differentiation associated protein 2 protein_coding Danio_rerio
ENSMUSG00000027865 Gdap2 ganglioside-induced differentiation-associated-protein 2 protein_coding Mus_musculus

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