C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COBW domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196873 CBWD3 9606 + 9:68232003-68300015 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360171 CBWD3-001 68241481-68300013 protein_coding
  ENST00000377342 CBWD3-201 68241926-68300015 protein_coding
  ENST00000377344 CBWD3-002 68241989-68299965 nonsense_mediated_decay
  ENST00000377349 CBWD3-005 68241945-68248589 nonsense_mediated_decay
  ENST00000469687 CBWD3-006 68256921-68270895 retained_intron
  ENST00000478048 CBWD3-003 68241956-68249031 protein_coding
  ENST00000611426 CBWD3-007 68241913-68269435 nonsense_mediated_decay
  ENST00000612050 CBWD3-013 68241985-68299647 nonsense_mediated_decay
  ENST00000614377 CBWD3-017 68285330-68299965 retained_intron
  ENST00000614398 CBWD3-012 68253356-68299647 processed_transcript
  ENST00000615061 CBWD3-009 68241954-68299994 nonsense_mediated_decay
  ENST00000616550 CBWD3-202 68241854-68259361 protein_coding
  ENST00000618217 CBWD3-203 68241889-68300011 protein_coding
  ENST00000618921 CBWD3-015 68232003-68299644 processed_transcript
  ENST00000619322 CBWD3-016 68272406-68299963 retained_intron
  ENST00000621396 CBWD3-014 68241951-68299647 nonsense_mediated_decay
  ENST00000621474 CBWD3-010 68241949-68298343 nonsense_mediated_decay
  ENST00000622755 CBWD3-008 68241985-68298191 nonsense_mediated_decay
  ENST00000622817 CBWD3-011 68254361-68299644 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360171ENST00000377349ENST00000469687ENST00000478048ENST00000611426ENST00000618921ENST00000619322
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360171 N/A N/A N/A N/A N/A N/A N/A N/A 0.099±0.00 N/A N/A N/A N/A N/A
ENST00000377349 N/A N/A 0.502±0.00 N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A 0.029±0.00 N/A
ENST00000469687 0.097±0.00 0.448±0.00 0.148±0.00 0.437±0.12 0.509±0.37 0.421±0.30 0.131±0.07 0.352±0.07 0.223±0.15 0.311±0.18 0.132±0.00 0.294±0.24 0.034±0.01 0.149±0.05
ENST00000478048 N/A N/A N/A 0.559±0.00 0.293±0.22 0.301±0.24 0.252±0.00 0.972±0.00 0.141±0.00 0.759±0.00 N/A 0.727±0.67 0.047±0.00 0.117±0.04
ENST00000611426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.437±0.00 N/A N/A N/A
ENST00000618921 0.034±0.00 0.272±0.00 0.396±0.00 0.730±0.46 0.310±0.00 N/A N/A N/A N/A 0.132±0.00 0.083±0.00 0.276±0.13 0.033±0.01 0.151±0.00
ENST00000619322 N/A N/A N/A N/A 0.231±0.00 N/A 0.080±0.00 0.162±0.00 0.139±0.00 N/A N/A 0.109±0.00 0.011±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038H CIL_00038H_0004 CGP 9:68232003-68304905

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004318 cbwd COBW domain containing protein_coding Danio_rerio
ENSMUSG00000024878 Cbwd1 COBW domain containing 1 protein_coding Mus_musculus

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