C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histone cluster 3, H2bb
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196890 HIST3H2BB 9606 + 1:228458107-228460470 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000620438 HIST3H2BB-001 228458107-228460470 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000620438
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000620438 0.144±0.00 0.306±0.00 0.032±0.00 0.372±0.08 0.079±0.00 0.420±0.20 0.205±0.10 0.061±0.03 0.174±0.10 0.623±0.03 0.046±0.00 0.275±0.20 0.049±0.00 0.224±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UD CIL_0000UD_0002 CGP 1:228456979-228460470

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034203 zgc:171759 zgc:171759 protein_coding Danio_rerio
ENSDARG00000051726 zgc:171759 zgc:171759 protein_coding Danio_rerio
ENSDARG00000051778 zgc:194989 zgc:194989 protein_coding Danio_rerio
ENSDARG00000068996 hist2h2l histone 2, H2, like protein_coding Danio_rerio
ENSDARG00000070289 zgc:171759 zgc:171759 protein_coding Danio_rerio
ENSDARG00000076129 CABZ01086354.1 Histone H2B protein_coding Danio_rerio
ENSDARG00000078724 wu:fe11b02 wu:fe11b02 protein_coding Danio_rerio
ENSDARG00000078941 ano9a anoctamin 9a protein_coding Danio_rerio
ENSDARG00000086591 zgc:171759 zgc:171759 protein_coding Danio_rerio
ENSDARG00000087854 ano9a anoctamin 9a protein_coding Danio_rerio
ENSDARG00000088028 wu:fe11b02 wu:fe11b02 protein_coding Danio_rerio
ENSDARG00000092743 zgc:171759 zgc:171759 protein_coding Danio_rerio
ENSDARG00000093195 si:dkey-261m9.6 si:dkey-261m9.6 protein_coding Danio_rerio
ENSDARG00000093756 wu:fe11b02 wu:fe11b02 protein_coding Danio_rerio
ENSDARG00000094610 wu:fe11b02 wu:fe11b02 protein_coding Danio_rerio
ENSDARG00000094744 zgc:171759 zgc:171759 protein_coding Danio_rerio
ENSMUSG00000056895 Hist3h2ba histone cluster 3, H2ba protein_coding Mus_musculus

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