C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB40C, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197562 RAB40C 9606 + 16:589357-629272 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000248139 RAB40C-001 590089-629272 protein_coding
  ENST00000509637 RAB40C-006 590296-625993 nonsense_mediated_decay
  ENST00000535977 RAB40C-201 589357-629271 protein_coding
  ENST00000538492 RAB40C-202 590077-629271 protein_coding
  ENST00000539661 RAB40C-203 589669-629271 protein_coding
  ENST00000561781 RAB40C-002 625614-629272 retained_intron
  ENST00000563109 RAB40C-003 590332-627583 protein_coding
  ENST00000564703 RAB40C-005 616645-626117 protein_coding
  ENST00000565511 RAB40C-004 590242-626083 nonsense_mediated_decay
  ENST00000566290 RAB40C-008 589669-627415 protein_coding
  ENST00000568586 RAB40C-009 590068-626121 protein_coding
  ENST00000569575 RAB40C-007 589357-626026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000248139ENST00000509637ENST00000538492ENST00000539661ENST00000561781ENST00000563109ENST00000564703ENST00000566290ENST00000568586ENST00000569575
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000248139 6.775±0.00 N/A N/A 1.070±0.00 2.567±0.00 N/A 0.898±0.00 9.285±0.00 3.506±0.00 4.293±0.00 7.285±0.00 N/A N/A N/A
ENST00000509637 N/A N/A N/A N/A N/A N/A N/A 1.937±0.00 N/A N/A N/A N/A N/A N/A
ENST00000538492 N/A 3.709±0.00 N/A 8.835±6.98 2.001±1.26 3.711±2.29 1.274±0.00 N/A 0.699±0.00 N/A N/A 6.781±4.33 13.144±2.74 11.266±1.89
ENST00000539661 N/A N/A 0.207±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561781 N/A 2.643±0.00 N/A 2.220±0.00 1.202±0.00 1.633±0.00 0.248±0.11 0.181±0.00 0.644±0.00 1.689±0.87 2.369±0.00 3.393±0.71 N/A N/A
ENST00000563109 N/A N/A 1.042±0.00 N/A 0.942±0.00 1.859±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564703 N/A N/A N/A N/A 1.208±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566290 N/A N/A N/A N/A N/A 1.205±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568586 N/A N/A 0.702±0.00 N/A N/A N/A N/A N/A 0.553±0.00 N/A N/A N/A N/A N/A
ENST00000569575 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.708±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016567 IEA protein ubiquitination
GO:0019003 IEA GDP binding
GO:0035556 IEA intracellular signal transduction
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061208 rab40c RAB40c, member RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000025730 Rab40c Rab40C, member RAS oncogene family protein_coding Mus_musculus

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