C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox C6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197757 HOXC6 9606 + 12:53990624-54030823 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243108 HOXC6-001 54028358-54030823 protein_coding
  ENST00000394331 HOXC6-002 54015897-54030733 protein_coding
  ENST00000504315 HOXC6-003 53990624-54028922 protein_coding
  ENST00000509328 HOXC6-004 53994944-54029689 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000243108ENST00000394331ENST00000504315
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000243108 8.592±0.00 4.914±0.00 2.414±0.00 0.012±0.00 2.696±1.93 2.080±0.00 0.021±0.00 9.606±0.00 0.195±0.00 18.143±10.69 3.089±0.00 4.637±1.79
ENST00000394331 N/A N/A N/A N/A 0.714±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000504315 N/A N/A N/A N/A N/A 0.350±0.00 N/A N/A 0.360±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0007275 TAS multicellular organismal development
GO:0009952 IEA anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048706 IEA embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000046045 hoxc6b homeo box C6b protein_coding Danio_rerio
ENSDARG00000070343 hoxc6a homeo box C6a protein_coding Danio_rerio
ENSMUSG00000001661 Hoxc6 homeobox C6 protein_coding Mus_musculus

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