C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S4, X-linked
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198034 RPS4X 9606 - X:72255679-72277300 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316084 RPS4X-001 72272042-72277300 protein_coding
  ENST00000373626 RPS4X-002 72274255-72277248 protein_coding
  ENST00000470671 RPS4X-004 72255679-72273371 processed_transcript
  ENST00000486733 RPS4X-003 72272713-72276227 processed_transcript
  ENST00000492695 RPS4X-005 72255784-72272723 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316084
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316084 487.882±0.00 130.741±0.00 54.367±0.00 107.688±23.11 248.881±167.76 402.691±271.14 44.753±7.05 185.131±94.35 109.396±2.13 260.979±147.04 85.879±57.99 617.922±540.41 472.887±367.41 180.759±142.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066A CIL_00066A_0001 CGP X:72181353-72302926
CIL_0006RO CIL_0006RO_0001 CGP X:72204657-72277300
CIL_0000YL CIL_0000YL_0002 CGP X:72255679-72307187

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0003735 IMP:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IDA:IEA ribosome
GO:0005844 IDA polysome
GO:0005925 IDA focal adhesion
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007275 IMP multicellular organismal development
GO:0008284 IMP positive regulation of cell proliferation
GO:0010467 TAS gene expression
GO:0015935 IDA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022627 NAS cytosolic small ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IMP positive regulation of translation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014690 rps4x ribosomal protein S4, X-linked protein_coding Danio_rerio
ENSMUSG00000031320 Rps4x ribosomal protein S4, X-linked protein_coding Mus_musculus

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