C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox C4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198353 HOXC4 9606 + 12:54016931-54056030 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303406 HOXC4-001 54016931-54055327 protein_coding
  ENST00000430889 HOXC4-003 54053877-54056030 protein_coding
  ENST00000507650 HOXC4-002 54037854-54053424 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000303406ENST00000430889
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000303406 N/A N/A N/A 0.106±0.00 0.137±0.09 N/A N/A N/A N/A N/A
ENST00000430889 5.302±0.00 0.083±0.00 1.700±1.10 2.081±0.00 0.051±0.00 0.049±0.00 0.377±0.00 9.447±5.26 1.909±0.42 4.216±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0009952 IEA anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048562 IEA embryonic organ morphogenesis
GO:0051216 IEA cartilage development
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070338 hoxc4a homeo box C4a protein_coding Danio_rerio
ENSMUSG00000075394 Hoxc4 homeobox C4 protein_coding Mus_musculus

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